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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGAAGGAAAAGGTGAAAGCGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattccatcatggttttatggtatgtttccttttgggggatcaattgccaattcagttaagctttttgctgttgatgtgattagagtggggttgtgggggctaaaaatgtatattttggggggcttgtgttaatatactattctttttggcatgcag

Basic information

species Glycine max
transcript GLYMA08G46090.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208056396|gb|GD853375.1|GD853375
EST:     GAAATATGTATCAACAAGATGACAAAGATTGGTTCCTGATAGCAA--T--                         AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GAAATATG-ATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|208051348|gb|GD847187.1|GD847187
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAA--T--                         AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|209724188|gb|BW659722.1|BW659722
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT---A                         AA-CCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|193446064|gb|FK412245.1|FK412245
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAA--T--                         AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|9984306|gb|BE658414.1|BE658414
EST:     GACAAAGATTGGTTCCTGATAGCAA--T--                         AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|14195902|gb|BE819899.2|BE819899
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAA--T--                         AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|208293143|gb|GE096393.1|GE096393
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAA--T--                         AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|58019857|gb|CX706599.1|CX706599
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAA--T--                         AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|9259263|gb|BE347471.1|BE347471
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT---A                         AA-CCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|208330473|gb|GE131298.1|GE131298
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT---A                         AA-CCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|208328160|gb|GE129598.1|GE129598
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT---A                         AA-CCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|193333493|gb|FK300447.1|FK300447
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAAT---A                         AA-CCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
EST: gi|213610535|gb|DB978562.1|DB978562
EST:     GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAA--T--                         AAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA
genomic: GGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattc ... tggcatgcagAAACCAGCTACCAAGTACCAACGGTATTGAATCCGTGGGTACTGGCAACAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGAAGGAAAAGGTGAAAGCGAATAATAGAAAGGAGGCGCAATTTTATGGAAATATGATCAACAAGATGACAAAGATTGGTTCCTGATAGCAATGTGAgtgttcattccatcatggttttatggtatgtttccttttgggggatcaattgccaattcagttaagctttttgctgttgatgtgattagagtggggttgtgggggctaaaaatgtatattttggggggcttgtgttaatatactattctttttggcatgcag

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