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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTCTGTTTATGGAAGAAAACAGAGTGAGTGGGGTCAGCTGGCTAGTTGGTTTGTTAACAATGCTCTTTATAGTAAGAATGCCGTATGGCTAATCCAGgtagtgtaattcatcttctagcttttgatccagttttctatcagtttggtttacactaacttcctgtgagtttatggtaaaagttatttccattatgaca...

Basic information

species Glycine max
transcript GLYMA08G40690.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40690.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0026g01480.t01 (Vitis vinifera), 5'ss of exon 11
GATCTCTGTTTATGGAAGAAAACAGAGTGAGTGGGGTCAGCTGGCTAGTTGGTTTGTTAACAATGCTCTTTATAGTAAGAATGCCGTATGGCTAATCCAGgtagtgtaattcatcttctagcttttgatccagttttctatcagtttggtttacactaacttcctgt--gagtttatggtaaaagttatttccattatgaca------
  | ||  | |||||||| ||||| || || |||| ||||||||| ||||||||  |||||||| |  |||| ||| ||||||| || ||| ||||||||||| |    ||       || | |||  ||  |    ||      |||  || || |||||  || |   ||||  ||||   | || ||  || | | | |      
AGTGTCAATATATGGAAGGAAACAAAGCGAATGGGATCAGCTGGCGAGTTGGTTCATTAACAATTCAATTTACAGTGAGAATGCTGTTTGGTTAATCCAGgtatt----ttttgacaataacatttcttctggcag-ctgctgtgttgtgttccattaactggctatctaagttcctggt---atttcttatcagtttaaaatttttt

upper sequence: GLYMA08G40690.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ30909 (Selaginella moellendorffii), 5'ss of exon 10
GATCTCTGTTTATGGAAGAAAACAGAGTGAGTGGGGTCAGCTGGCTAGTTGGTTTGTTAACAATGCTCTTTATAGTAAGAATGCCGTATGGCTAATCCAGgtagtgtaattcatcttctagcttttgatccagttttctatcagtttggtttacactaacttcctgtgagtttatggtaaaagttatttccattatgaca
||||||||||||||| |||||||| || ||||||| |||  | || || ||| |||| ||||| | | | |||||| |||| | ||| ||||||||||||||  ||  | | ||   || | ||        || |||||   | || |  | ||   |                                         
GATCTCTGTTTATGGCAGAAAACAAAGCGAGTGGGATCAATTAGCAAGCTGGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgtt-tgcgaattattcactcgttt--------gtcttctacatgctttgcgttcatgcag----------------------------------------