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GCTCTGAGTGAGAGAAGCTATGAGCTTGTCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaaattgttttggcaattcatgtaagcctcagtagctctgaataagaaatcatcacatctaatgcgacttgtttgtatttagtcataaaactg...
species | Glycine max |
transcript | GLYMA08G37270.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|6134799|gb|AW133192.1|AW133192
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTNCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|9900480|gb|BE609448.1|BE609448
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAAAATCACCTGGTTTTGGTGAATCTGAAGAATAAT GGTATTGATGGCTCCAGAGTTGAGAAAGTGTTGGAAGCAGTTCATATTGCAEST: gi|120496684|gb|EH224851.1|EH224851
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|9902305|gb|BE611273.1|BE611273
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: CTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|120496962|gb|EH225129.1|EH225129
genomic: CTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|120532861|gb|EH260994.1|EH260994
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|7326943|gb|AW620741.1|AW620741
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|15203223|gb|BI425991.1|BI425991
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|209699628|gb|BW655720.1|BW655720
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|151399265|gb|EV269136.1|EV269136
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|12690400|gb|BG156736.1|BG156736
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: CTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|151406194|gb|EV276009.1|EV276009
genomic: CTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|22524932|gb|BU083743.1|BU083743
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCAEST: gi|209699198|gb|BW656187.1|BW656187
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
EST: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAG GGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAGGCAGTTCATATTGCA
genomic: TCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaa ... aaatgtgcagGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAAGCAGTTCATATTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTGAGTGAGAGAAGCTATGAGCTTGTCTCTGGTGGAACCGAGAATCACCTGGTTTTGGTGAATCTGAAGAATAAGgtaataggaaattgttttggcaattcatgtaagcctcagtagctctgaataagaaatcatcacatctaatgcgacttgtttgtatttagtcataaaactg
- - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaga