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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagggcgtgtttaagctttagaaaaagtgctttcatggtatagctttgcatgtttctgttattattaatttttttaattgattcag

Basic information

species Glycine max
transcript GLYMA08G24660.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24660.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G16780.1 (Arabidopsis thaliana), 5'ss of exon 12
ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgt-----aatttagggcgtgtttaagcttta----gaaaaagtgctttcatggtatagctttgcatgtttctgttatta--ttaatttttttaattgattcag
|||||| ||||| ||  | ||||| ||||| ||||||||||||||| |||||||  |||| ||||| |||||||||||  |||||||      |  || |       ||   |||      | ||  |  |   | | |   || |   |  |   |  ||||    || |   |||||  | |||||
ACAAACCAGTGATCCTCAGAGTGGGTTTGCGACTGTTGAGAAGGATGTTCCTGGAAGCTTAACACCAATGCTTGGTGACAGAAAGgttacatgacctaagataaaaatacatttttctttaacaacttattaataagatgccgcctaatacatgattagtattgatctattgactttaaacgtttcag

upper sequence: GLYMA08G24660.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 12
ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaa--------tttagggcgtgtttaagctttagaaaaagtgctttcatg-gtatagctttgcatgtttctgttattattaatttttttaattgattcag
 ||||||||||| || | |||||||||||| || |||||||||||| | |||||| |||| ||||| |||||||| ||| ||||||| |        ||||  | |||||||  |||     |   || || || |   || | |||  ||  |  | |    |   | |      |   ||    
CCAAACTAGTGATCCCAGAAGTGGTTTTGCTACAGTTGAGAAGGATGTCCCTGGGAGCTTAACACCCATGCTTGGCGATAGAAAGgtcagtctactttttattgtgtgtttactcttccctcatcatgtttgcaagtacatgggtttctataatattatatccacagaatggcggcacacatgtc-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410856|gb|EV280671.1|EV280671
EST:     TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG                         GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
genomic: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
EST: gi|298174867|gb|HO014784.1|HO014784
EST:     TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG                         GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
genomic: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
EST: gi|192296695|gb|FG991263.1|FG991263
EST:     TTGAGAAG-ATCTTCCTGGGGGCTTGGCACCTATGCTTGGTGATCGAAAG                         GTAGAGCATTTTCTGG
genomic: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGG
EST: gi|16348613|gb|BI974208.1|BI974208
EST:     TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG                         GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
genomic: TTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT