Sequence
atgc intronic sequence ATGC exonic sequenceGTTCCTGCTGATGGAGTATTAATCACGGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTgtatgttttatatactttctattgaccaaattattgcttattaattcttatgacttttaagaaaatagtgttctgcag
Basic information
species | Glycine max |
transcript | GLYMA08G23760.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os02g08018.1 (Oryza sativa), 5'ss of exon 7
GTTCCTGCTGATGGAGTATTAATCACGGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTgtatgt--tttatatactttctattgaccaaattattgcttattaattcttatgacttttaagaaaatagtgttctgcag-
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GTCCCGGCTGATGGTGTTTTGGTTAGTGGTCATTCTCTTGCCATTGATGAATCCAGTATGACTGGGGAAAGCAAGATCgtaagcaaccttttcgacccctattgtcctatataggactgact--tccccatcatatgtaaaccctgtttcttttattag
upper sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 9
GTTCCTGCTGATGGAGTATTAATCACGGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTgtatgttttatatactttctattgaccaaattat-tgcttattaattcttatgactt-ttaaga-aaatagtgttctgcag
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GTCCCTGCGGATGGAGTGCTAATTAGTGGTCATTCTCTTGCTATTGATGAATCTAGCATGACCGGTGAAAGCAAGATTgtgagttcattatggttctgcttgtgcaatttttatggtcatcttccctttctatttgctaacacagacctttgtttgcag
upper sequence: GLYMA08G23760.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 11
GTTCCTGCTGATGGAGTATTAATCACGGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTgtatgttttatatactttctattg-accaaattattgcttattaattcttatgacttttaagaaaatagtgttctgcag
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GTCCCTGCAGATGGAATCTTAATTACTGGTCATTCTCTTGCAATTGATGAATCTAGCATGACTGGTGAAAGCAAGATTgtaagctggttctaccttgtaatgtaatatattgattcttataagtgtttt--gttctcaagcatgatgtctctggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208172989|gb|GD972546.1|GD972546EST: GCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATT GTTCACAAGGATCACAAAACACCATTTTT
genomic: GCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTgtatgtttta ... tgttctgcagGTTCATAAGGATCACAAAACACCATTTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTCCTGCTGATGGAGTATTAATCACGGGCCATTCACTTGCAATTGATGAATCCAGTATGACTGGTGAAAGCAAGATTgtatgttttatatactttctattgaccaaattattgcttattaattcttatgacttttaagaaaatagtgttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA