Sequence
atgc intronic sequence ATGC exonic sequenceATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCATTTTCCCATCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAGgtaagttttcagaacatgagcttggtttgctgaagtggaggaactgaatatgttgctaactaaattatgcaatttaag
Basic information
species | Glycine max |
transcript | GLYMA08G22910.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 13
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 12
ATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCATTTTCCCATCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAGgtaagttttcagaacatg---------agcttggtttgctgaagtggaggaactgaatatgttgctaactaaattatgcaatttaag
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ATTGATGCTCATGCTGGTGGAGTAAATGATCTGGCATTCTCTCATCCAAATAAGCAACTTTGCGTTATAACCTGTGGTGATGACAAGACCATCAAGgttggtttgtcattcttgctttattaaatatttaattgtttaaatagcaggaaagttgcaattatttctaatatgttgggattgtag
upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 13
lower sequence: EFJ30926 (Selaginella moellendorffii), 5'ss of exon 12
ATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCATTTTCCCATCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAGgtaagttttcagaacatgagcttggtttgctgaagtggag-gaactgaatatgttgctaactaaattatgcaatttaag
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ATCGATGCTCATGTTGGTGGAGTCAACGACCTTGCATTTTCTCATCCCAACAAGCAACTCTGTGTTATTACTTGTGGAGACGATAAGACCATAAAGgttacctctgctatcg-atttttgttatgcattcttatatcggttttcacgtgtag-----------------------
upper sequence: GLYMA08G22910.2 (Glycine max), 5'ss of exon 13
lower sequence: EFJ17248 (Selaginella moellendorffii), 5'ss of exon 12
ATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCATTTTCCCATCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAGgtaagttttcagaacatgagcttggtttgctgaagtggag--gaactgaatatgttgctaactaaattatgcaatttaag
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ATCGATGCTCATGTTGGTGGAGTCAACGACCTTGCATTTTCTCATCCCAACAAGCAACTCTGTGTTATTACTTGTGGAGACGATAAGACCATAAAGgttacctctgctatc--gatttttgttcggcattcttatatcggttttcacgtgtag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18848902|gb|BM568012.1|BM568012EST: CAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAG GTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAG
genomic: CAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAGgtaagttttc ... gcaatttaagGTATGGGATGCTGCTTCGGGTGCAAAGCAGTATACTTTTGAAGGTCATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTGATGCTCATGTTGGTGGAGTAAATGATCTGGCATTTTCCCATCCAAATAAGCAACTATGCGTGATAACTTGTGGTGATGATAAAACCATTAAGgtaagttttcagaacatgagcttggtttgctgaagtggaggaactgaatatgttgctaactaaattatgcaatttaag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA