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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGATATCACTAAAATTGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATGgtaataagtttttcctttcaagaatttctttactgattgataactctagtcttaactgagaaaaacattatttctttcttttgtgacag

Basic information

species Glycine max
transcript GLYMA08G21380.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G21380.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g03200.t01 (Vitis vinifera), 5'ss of exon 12
CAGTTCTTGAAGGCTGTAGATGAAATCACGTTGAATGATATCACTAAAATTGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATGgtaataagttt-ttcctttcaagaatttctttactgattgataactctagtcttaactgagaaaaacattatttctttcttttgtgacag
|| ||||||||||| |||||||||||||| ||||| |||||||| |  ||||| || | ||| ||||| |||||| | || |||||||||||||| || ||||||     | || |   |||  |   |||   |||||  | ||   | |   | ||    |||   |   | |  ||||||||  |||
CATTTCTTGAAGGCAGTAGATGAAATCACTTTGAAGGATATCACCACCATTGCCCAGAGGATCATTTCTTCACCTCTTACAATGGCATCATATGGCGACGgtaatctccctctttccaccaatgaacccttctatgatt--tcaccggaattgaatcttgagaaa---tctctcccctcttttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18732951|gb|BM527341.1|BM527341
EST:     TGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATG                         TCATGAATGTGCCAAGTTATGAATCTGTTAACAGCAAGTTCCATGCAAAAT
genomic: TGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATGgtaataagtt ... tttgtgacagTCATGAATGTGCCAAGTTATGAATCTGTTAACAGCAAGTTCCATGCAAAAT
EST: gi|8826432|gb|BE210162.1|BE210162
EST:     TGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGAATG                         TCATGAATGTGCCAAGTTATGAATCTGTTAACAGCAAGTTCCATGCAAAAT
genomic: TGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATGgtaataagtt ... tttgtgacagTCATGAATGTGCCAAGTTATGAATCTGTTAACAGCAAGTTCCATGCAAAAT
EST: gi|10233365|gb|BE802253.1|BE802253
EST:     TGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATG                         TCATGAATGTGCCACGTTATGAATC
genomic: TGCTCAAAAGATTATTTCCTCACCTTTGACCATGGCATCATATGGGGATGgtaataagtt ... tttgtgacagTCATGAATGTGCCAAGTTATGAATC