1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTATTGTCCAGTGACAATCCAAGATATGGATATAATGCTGCCACTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttctgtttgagcatcaatattttttaattttcttccatgtgattgccaaacaatctgaataattaaacttaggttgtgtgagctttcatttatt...
species | Glycine max |
transcript | GLYMA08G18760.3 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTAAATTATTGAAGTATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|16278312|gb|BI942837.1|BI942837
genomic: -TAAA-TA-TGAAG-ATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|6454762|gb|AW185445.1|AW185445
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|14516384|gb|BI095056.1|BI095056
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAATG GTGGTCAGATGTTGCCTGTAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|16344875|gb|BI970470.1|BI970470
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|208203798|gb|GE004825.1|GE004825
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|209702280|gb|BW677975.1|BW677975
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|6455205|gb|AW185888.1|AW185888
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|7685797|gb|AW756445.1|AW756445
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|16278884|gb|BI943144.1|BI943144
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|254328223|gb|GR835188.1|GR835188
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|207761079|gb|GD733254.1|GD733254
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|6718933|gb|AW306580.1|AW306580
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|20814636|gb|BQ299114.1|BQ299114
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: GTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|208069778|gb|GD870441.1|GD870441
genomic: GTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|6915381|gb|AW396911.1|AW396911
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|16282149|gb|BI944863.1|BI944863
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGCCAGATGTTGCCTGGAGCATGCAACCTCTGTAGCCAAAACCTTCTTAEST: gi|16282846|gb|BI945236.1|BI945236
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGCCAGATGTTGCCTGGAGCATGCAACCTCTGTAGCCAAAACCTTCTTAEST: gi|16281476|gb|BI944507.1|BI944507
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|7639932|gb|AW734243.1|AW734243
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|193311611|gb|FK275521.1|FK275521
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATACGGAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCTTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|10232698|gb|BE801586.1|BE801586
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTCATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|209698543|gb|BW652409.1|BW652409
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|208072209|gb|GD870225.1|GD870225
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGEST: gi|151401056|gb|EV270870.1|EV270870
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGG
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|8402244|gb|BE057878.1|BE057878
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|27427470|gb|CA938990.1|CA938990
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|20449400|gb|BQ253524.1|BQ253524
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATEST: gi|120534219|gb|EH262352.1|EH262352
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCAT
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|208144499|gb|GD941662.1|GD941662
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|6227700|gb|AW156299.1|AW156299
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: TGGTAAATATGAAGAATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|254322415|gb|GR837829.1|GR837829
genomic: TGGTAAATATGAAG-ATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|193320008|gb|FK287643.1|FK287643
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: GAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTAEST: gi|151412595|gb|EV282407.1|EV282407
genomic: GAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAA-CCTTCTTAEST: gi|46492945|gb|CN472501.1|CN472501
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
EST: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAG GTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
genomic: CTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttct ... tcttgtacagGTGGTCAGATGTTGCCTGGAGCATGCAGCCTCTGTAGCCAAAACCTTCTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTGTCCAGTGACAATCCAAGATATGGATATAATGCTGCCACTGGTAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCAACAAAGgtgattttctgtttgagcatcaatattttttaattttcttccatgtgattgccaaacaatctgaataattaaacttaggttgtgtgagctttcatttatt
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA