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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtag

Basic information

species Glycine max
transcript GLYMA08G16870.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G16870.2 (Glycine max), 5'ss of exon 12
lower sequence: AT3G60070.1 (Arabidopsis thaliana), 5'ss of exon 12
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacag-cattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtag
|| |   |  |   |||||| |||||||||   || || ||||| || || ||||| || || ||||| |||||| ||||||||||||||||| ||||||||||||    |||   |||      | ||||||      | ||  ||||  ||| ||  |||| ||     | | || |    | |  |  | | |   | ||    | |         
GGTGCAGAAGTCGGTGGTTGCGCATTTGTTTGCGGCTCGTTGAGCTTCTTAGACAAGATGTCTTGTGGACTTGCTCTATATGTTCTTCAGTCACACCAAAgtaagtcaaataa---tctgatgactggaacatggc-cctataaagttt-ataaccattcatttttcaccgtgagattagcggttttgtgctgaaactgtttttggtttacag------

upper sequence: GLYMA08G16870.2 (Glycine max), 5'ss of exon 12
lower sequence: AT2G44280.2 (Arabidopsis thaliana), 5'ss of exon 12
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttc-------atattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtag
||   ||| ||    || ||||| || |||  ||| ||||| || || || |||||||| ||||||||||||||||||||||||||||||||| | ||| |||||||| ||   ||||||||       || || ||  | ||     | |  ||| | |||  |    |                                                       
GGTTCGAAACTCGGGGGATGTGCTTTCGTTTGTGGGTCATTAAGCTTCTTAGACAAAATGTCATGTGGGCTTGCTTTATATGTTCTTCAGTCACATCAAGgtaagttt-ttgtctttctttctaatattatcttaaaattgatggaagtctaatttggaaaatggtgcag-------------------------------------------------------

upper sequence: GLYMA08G16870.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv13s0156g00080.t01 (Vitis vinifera), 5'ss of exon 13
GGAGAGAACCTTAATGGTTGTGCATTTGTTGTTGGATCATTGAGTTTTTTGGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttcttaaatttctttcatattgaacattatatgtctattgtttcgtaaacagcattgttactaatcatatcatttttctaatcatcatatattgttcaaatcatcaatgtag
|| ||  | ||  |||| ||||||||||||  ||| ||||||||||| ||||||||||||||||||||||| || || |  |||||| ||||| |   ||||||||   | |  |     ||   || ||   | | | || | |||  |   |  ||   |    |    | |   |   ||   | ||| |  |||    ||              
GGTGAAGATCTCCATGGCTGTGCATTTGTTTATGGCTCATTGAGTTTCTTGGACAAAATTTCATGTGGGCTAGCCTTGTTCGTTCTTGAGTCATATGGAAgtaagtcgataagctagtcatcc--ttcaatgctttttatc-agtgtcaccagactagacctaaagcagcccttgcaaggcttacta-catga-gtatgacccat-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337979|gb|CO981845.1|CO981845
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         --CTC-C-----AG-----G-CAACAACCCAATTCCCCTTTTCAGTTACAA
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... atcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA
EST: gi|6200824|gb|AW152924.1|AW152924
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         ATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... atcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA
EST: gi|27427316|gb|CA938836.1|CA938836
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         ATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTT
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... atcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTT
EST: gi|18038731|gb|BM307025.1|BM307025
EST:     GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAA                         ATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA
genomic: GGACAAAATTTCATGTGGGCTTGCTTTATATGTTCTTCAGTCAAACCAAAgtaagtttct ... atcaatgtagATCTCTCTCCGCAGCTCCAGGCAACAACCCAATTCCCCTTTTCAGTTACAA