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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGTGTTAGTAAGACATCTAGGTTTAGTTGTGTTTTTGGTGATGGATGCTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgcttaatccatacttgccattttccctttccaataatcatttagaagttttttcatgtttgaaaactgtaatgcag

Basic information

species Glycine max
transcript GLYMA08G06860.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22929134|gb|BU546273.1|BU546273
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: gi|207734220|gb|GD711064.1|GD711064
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: gi|254334807|gb|GR844592.1|GR844592
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: gi|208256522|gb|GE053263.1|GE053263
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
EST: gi|207692333|gb|GD674474.1|GD674474
EST:     CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATG                         ATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT
genomic: CTGTTGTTTTTGTTGCGACTACGACATTAACGATAACCCAGGCTTCCATGgtgattgctt ... tgtaatgcagATAGCTCGAAATGTGACCACAAATGAACTAGCAAATTCCTCCCGTTATGAT