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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTCAATGTGGAACTTGACACGGATAGAAGTCCAACTGTGCAACATGTTGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattttcgtcctgattgttttaagaggtattgtttatcttggatttcttatacattttttactgtagagttgagttcttttgactaaatctttat...

Basic information

species Glycine max
transcript GLYMA08G03760.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G03760.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 5'ss of exon 12
TCTTTCAATGTGGAACTTGACACGGATAGAAGTCCAACTGTGCAACATGTTGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTTgtaagtat---tttcgtcctgattgttttaagaggtattgtttatcttggatttcttatacattttttactgtagagttgagttcttttgacta--aatctttat
| ||||||||||||| ||||||  | | ||| | ||||||||||||||||||||||| || |  ||| || ||||||| | ||||||||| ||| | || || ||| |   ||||  |     |  ||    |    ||  ||||||||  |||| |||  ||  |    ||||   |||  ||  ||  |||   ||| ||   
TGTTTCAATGTGGAATTTGACAAAGGTGGAAATTCAACTGTGCAACATGTTGTCTCCCGAAGGGCCAAAAGTCTCTCTTGGTTCTTATAACTGGGGACTCgtgagtttccctttcaacgcacctacttatttattatttagttatcttgcttttcctat-tatcatgatttgtaactttgttttggttgaactttcaattttag-

upper sequence: GLYMA08G03760.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 5'ss of exon 12
TCTTTCAATGTGGAACTTGACACGGATAGAAGTCCAACTGTGCAACATGTTGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattttcgtcctgattgttttaagaggtattgtttatcttggatttcttatacattttttactgtagagttgagttcttttgactaaatctttat-
||| |||||||||||||||||| |||||||||| ||||| ||||||||||| ||||| ||||||   | ||| || || || || ||||| ||| | |||||||||||        |   |  |  |  ||  |     |    |  |||||  || ||   |||| |  |     |||||     ||||   | |  || 
TCTGTCAATGTGGAACTTGACAAGGATAGAAGTTCAACTATGCAACATGTTATCTCCTGAGGCAAGCCCACTGTCACTTGCGTCGTATAACTGGGGCCTTgtaagtatcactactattcctcataaagtagaaagacgatgctctttatttcagatgcaccatttagt-catttgagagtttgcaggactttctgtaaata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10846218|gb|BF071273.1|BF071273
EST:     TGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTT                         GTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTC
genomic: TGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattt ... ttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTC
EST: gi|7234746|gb|AW570080.1|AW570080
EST:     TGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTT                         GTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTC
genomic: TGTCTCCAGAGGCACCACAACTCTCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattt ... ttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTC
EST: gi|22933867|gb|BU551006.1|BU551006
EST:     TCTCTCGCTTCNTATAATTGGTGTCTT                         GTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCNGCATTC
genomic: TCTCTCGCTTCTTATAATTGGTGTCTTgtaagtattt ... ttttgaacagGTGTTCATCGCAATGCTGGTGGATAACTTTCTTTATCCCGTATCGGCATTC