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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACGACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatttaattatcatgcccttcaattctataaattcttattgctactactggtgcagccatctaattagatgttgaagacaacctttcttaacactaggt...

Basic information

species Glycine max
transcript GLYMA08G01790.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01790.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv02s0025g03490.t01 (Vitis vinifera), 5'ss of exon 6
GTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACGACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatttaattatcatgcc-cttcaatt---cta-taaattcttattgctactactggtgcagccatctaatta-gatgttgaagacaacctttcttaacactaggt
 |||  ||||||||| | ||||| ||||| |||||||| || || ||||||||||||||| | ||||| ||||||||||||||||| | |||||   | ||   ||| |||   ||| |  |||   ||||  |||        ||  ||| | ||  | ||||  |||||  |  || | | | |    
CTAGCTTGTGGAGGACTCGCTGGGTCTACTGCTGCTTTTTTTACTACTCCTTTTGATGTGGTGAAGACAAGATTACAGACACAGgtttgtaatttgtaagctgtttccattgagctactgcatttgcattgg-acttagcccaaagtaatcaagttgtgctgttagagacattcaatcatca-att----

upper sequence: GLYMA08G01790.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ26054 (Selaginella moellendorffii), 5'ss of exon 6
----------------GTAGTGTGTGGAGGATTAGCTGGATCTACGGCTGCTTTATTCACGACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtat--ttaattatcatgcccttcaattctataaattcttattgctactactggtgcagccatctaattagatgttgaagacaacctttcttaacactaggt
                 | | |||||||||| | || ||||| ||||| || ||||| || || |||||||| ||| | ||||| ||||| |||||||||||||  || | |   | |    |    |  |      |||   || | | ||  | |  |||                                        
ATGGAAAAATCTTCAGCTCGCGTGTGGAGGACTTGCAGGATCGACGGCAGCCTTATTTACCACACCTTTTGACGTGGTGAAGACAAGATTGCAGACACAGgtatctttgactgcaaagtttctttccttcacgttaacttgg-gcgatttct--ttcttccag---------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31458192|gb|CD400220.1|CD400220
EST:     CTTTATTCACGACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAG                         ATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCCCTTTACAAA
genomic: CTTTATTCACGACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGgtatttaatt ... tgcactgcagATTCCTGGGTCTGCAAATCAATATGATAGTGTGCTCCATGCCCTTTACAAA