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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTAGTGATGAATTTAAACGTGTAATTGGTTCTCTACGTGGTCATGATGACAAGATACGTGTGGTTTTGAATAAGGCAGACCAAATTGATACTCAACAAgtaatgcagtatcggcaacttaatttaacctgatctaaataaatttgttatttactcattgacttacttctatgcctcattttaaaattgtag

Basic information

species Glycine max
transcript GLYMA07G39450.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G39450.1 (Glycine max), 5'ss of exon 12
lower sequence: AT4G05520.1 (Arabidopsis thaliana), 5'ss of exon 12
CATTAGTGATGAATTTAAACGTGTAATTGGTTCTCTACGTGGTCATGATGACAAGATACGTGTGGTTTTGAATAAGGCAGACCAAATTGATACTCAACAAgtaa--tgcagtatcggcaacttaatttaacctgatctaaataaatttgttatttactcattgacttacttctatgcctcattttaaaattgtag
||| ||||||||||| |||||||| ||    |||||||||||| |||| |||||||| ||||| || || || || || |||||| ||||||||||||||||||  | |  | ||| |   || ||||    || ||   ||||  ||  | |||||||||||     |  || |  || |              
CATCAGTGATGAATTCAAACGTGTGATAACATCTCTACGTGGTAATGAAGACAAGATCCGTGTTGTCTTAAACAAAGCTGACCAAGTTGATACTCAACAAgtaagtttcgttttcgtcccattcatttgttatgttc---ataagcttcatttttactcattgttgagccgctttttctaaag------------

upper sequence: GLYMA07G39450.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0516g00020.t01 (Vitis vinifera), 5'ss of exon 13
CATTAGTGATGAATTTAAACGTGTAATTGGTTCTCTACGTGGTCATGATGACAAGATACGTGTGGTTTTGAATAAGGCAGACCAAATTGATACTCAACAAgtaa----tgcag-tatcggcaacttaatttaacctgatctaaata---aatttgttatttactcattga--cttacttctatgcctcattttaaaattgtag--------
 || |||||||||||||| ||||| ||||  |||||||||||| ||||||||||||||||||| |||||||| || || || ||| | ||||| |||||||||     | ||  | |   |  |||| |||    |  |||  |||   |  || |     |   |||||  || | |||| || ||   ||  |  ||||          
TATCAGTGATGAATTTAAGCGTGTGATTGCATCTCTACGTGGTAATGATGACAAGATACGTGTAGTTTTGAACAAAGCTGATCAAGTCGATACACAACAAgtaggatttacaactgttatcctcttatttttcattcctcttcatatttaccttttctcccagcaattgatcctcatttct-tgacttgattgcatcttgttatactatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295510|gb|FG988084.1|FG988084
EST:     ACAAGATACGTGTGGTTTTGAATAAGGCAGACCAAATTGATACTCAACAA                         CTCATGAGAGTTTATGGAGCATTGATGTGGTCTTTGGGGAAAGTTCTGAAT
genomic: ACAAGATACGTGTGGTTTTGAATAAGGCAGACCAAATTGATACTCAACAAgtaatgcagt ... aaaattgtagCTCATGAGAGTTTATGGAGCATTGATGTGGTCTTTGGGGAAAGTTCTGAAT