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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGgtttggtgaaccaattccaccatacaaccatgtatatttgatggagattactattatttttagttcctaaactttttaggacttctgtttttagtaatta...

Basic information

species Glycine max
transcript GLYMA07G38820.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38820.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 12
TGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGgtttggtgaaccaattccacca-tacaaccatgtata----------tttgatgga--gattactattatttttagttcc----taaactttttaggacttctgtttt--tagtaatta-----------------------------------------
||||||||| |||||||||||||||||||| || |||| ||||||||||||||||||||| || ||||| ||| |  ||||||| ||| |||||||||||||||| |  |  ||||||| || ||  |   |  ||           | || || |   | |  ||  | ||| |  ||     |   |||||  |   ||||||| |  |   ||| |                                         
TGATTCAATCATATCACATGGAAGCTTCTTAAACAATTGCTTCATAGAGCACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttctataaattccatcaatatgattgtaaatgaacccatcactctgctgcataaaatgatacaaatttgaagtctgcattgtgcttttatgtgattctgttgtgctctaaatcaatcaaggtatgagtacccttatgagggcctaatgcttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495131|gb|EH223298.1|EH223298
EST:     ACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAG                         GATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCA
genomic: ACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGgtttggtgaa ... ttatatgcagGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCA