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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatatttaaattcattgcttctttgtttacctcttcatttgaatatttattgagggagttctttattttacag

Basic information

species Glycine max
transcript GLYMA07G36680.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G36680.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os11g29380.1 (Oryza sativa), 5'ss of exon 13
ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatatttaaattcattgcttctttgtttacctcttca-tttgaatatttat-tgagggagttctttattttacag------
||||||||| || || |||||| | || ||||||||| |||| |||||||||||||| ||||||||  |||| ||||| |||||||||        |||  |||||   |  | ||  | | || |     ||| ||| ||      || ||| |  | ||       
ATATGATTCATCGAAGACATTCACCCAGAATGTTGAACTGACGGATCCAATTATTTCACGTTTTGATGTCCTTTGTGTTGTGAAGgtttggagctgatt--ttgctgtgtaatatatttttgcagtcctggtatctatctgtactgattttttctggtgcaaatgcag

upper sequence: GLYMA07G36680.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 12
ATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatatttaaatt--cattgcttctttgtttacctcttcatttgaatatttat---tgagggagttctttattttacag
|||||||||||| || ||||| || ||||||||||||||||||||||||||  ||||||| |||||  |||||||||| || |||||||| |||  | |    ||   | ||  ||||| | |  || ||    ||||     | ||||    | | |  | |||
ATATGATTCCTCGAAGACATTTTCACAAAATGTTGAATTGACAGATCCAATCGTTTCTCGGTTTGATGTCCTCTGTGTTGTCAAGgttatttttctactactcttatcttttcctttacatttctatgtgttactttaagcacgggggaaacttgtttaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13787997|gb|BG650589.1|BG650589
EST:     AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAG                         GATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
genomic: AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatattta ... tattttacagGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
EST: gi|207811911|gb|GD783496.1|GD783496
EST:     CTCTGTGTAGTGTAAG                         GATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGA
genomic: CTCTGTGTAGTG-AAGgttatattta ... tattttacagGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGA
EST: gi|15813323|gb|BI785598.1|BI785598
EST:     AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAG                         GATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
genomic: AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatattta ... tattttacagGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
EST: gi|27424931|gb|CA936451.1|CA936451
EST:     AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAG                         GATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
genomic: AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatattta ... tattttacagGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
EST: gi|193383665|gb|FK346828.1|FK346828
EST:     AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAG                         GATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
genomic: AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatattta ... tattttacagGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
EST: gi|15813380|gb|BI785655.1|BI785655
EST:     AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAG                         GATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC
genomic: AATTGACAGATCCAATTATTTCTCGTTTTGACATCCTCTGTGTAGTGAAGgttatattta ... tattttacagGATGTTGTTGATCCGGTCACTGATGAAATGCTTGCAACGTTTGTCGTTGAC