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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCCAGACCTGGGTTGGATGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtaagcactgtttattttcttctctctgtttggtttggtacttttacaaactatttctgttgtccaaatgcattacactttcaaagttttcttatttctcaatctcaatctgacgtgtag

Basic information

species Glycine max
transcript GLYMA07G35280.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35280.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 11
GCAGCCAGACCTGGGTTGGATGAGAAGATTGCAACAAATACTTGGTCGGAAGCACCAGCGCAACCTGCATgtaagcactgtttattttcttctctctgtttggtttggtacttttacaaactatttctgttgtccaaatgcattacactttcaaagttttcttatttctcaatctcaatctgacgtgtag
 || || ||  |||| |||||||| ||||| || ||||||||||||||||| |||||||| ||||| |||||| || ||    ||||  | | | |||||| |  |   ||    |||  | || |  |   ||  | | ||   |   |  | ||                                  
CCAACCGGATTTGGGATGGATGAGGAGATTACAGCAAATACTTGGTCGGAAACACCAGCGTAACCTTCATgtatgctctaccaatttattccaccctgtttagaatcacacacacacatgcaatcttag--atctgatttcacctctactgtatag----------------------------------