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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttaggacgtgtttaagctttagaaaaagtgctttcgtggaatagctttgcatttttctgttaaaatcttttttttttaattgattcag

Basic information

species Glycine max
transcript GLYMA07G34600.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G34600.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G16780.1 (Arabidopsis thaliana), 5'ss of exon 12
ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgt-----aatttaggacgtgtttaagctttagaaaaagtgctt--tcgtggaata--gctttgcatttttctgttaa-aatcttttttttttaattgattcag
|||||| ||||| ||  | ||||| ||||| ||||||||||||||| |||||||  |||| ||||| |||||||||||  |||||||      |  || ||      ||   |||     ||   |||  |  |   ||   || |   |  |   |  ||   |||| ||   |||||  | |||||
ACAAACCAGTGATCCTCAGAGTGGGTTTGCGACTGTTGAGAAGGATGTTCCTGGAAGCTTAACACCAATGCTTGGTGACAGAAAGgttacatgacctaagataaaaatacatttttctttaacaacttattaataagatgccgcctaatacatgattagtattgatctattgactttaaacgtttcag

upper sequence: GLYMA07G34600.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 12
ACAAACTAGTGACCCAAAAAGTGGTTTTGCAACTGTTGAGAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaa--------tttaggacgtgtttaagctttagaaaaagtgctttcgtgga-atagctttgcat--ttttctgttaaaatcttttttttttaattgattcag
 ||||||||||| || | |||||||||||| || |||||||||||| | |||||| |||| ||||| |||||||| ||| ||||||| |        ||||    |||||||  |||     |   || || |  | | || | |||  ||  | || | |  | |   |        |  ||      
CCAAACTAGTGATCCCAGAAGTGGTTTTGCTACAGTTGAGAAGGATGTCCCTGGGAGCTTAACACCCATGCTTGGCGATAGAAAGgtcagtctactttttattgtgtgtttactcttccctcatcatgtttgcaagtacatgggtttctataatattatatccacagaatggcggcacacatgtc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053462|gb|BM732129.1|BM732129
EST:     GAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG                         GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
genomic: GAAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
EST: gi|26267806|gb|CA818869.1|CA818869
EST:     AAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAG                         GTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT
genomic: AAGGATCTTCCTGGGGGCTTGACACCTATGCTTGGTGATCGAAAGgtaatttagg ... attgattcagGTAGAGCATTTTCTGGGAATTAAGAGGAAAGCTGAACCATCAAGCTCGGAT