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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgattacacttcttgaactttacaatcatcttaagcacatccaccaccattttgaatgacatgatttccttacgacatacctctactcactgtttctttggtttgctatacag

Basic information

species Glycine max
transcript GLYMA07G31090.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31090.3 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os07g37740.1 (Oryza sativa), 5'ss of exon 12
ATTTTCTACTTCGTTGGATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgat-tacacttcttgaactttacaatcatct-------taagcacatccaccaccattttgaatgacat-gatttcctta---cgacatacctctactcactgtttctt-tggtttgctatacag--------------------------------------------------------------------
|| |||||||| |||||||||||||| |||||| | ||| | ||| ||||||| ||||| || |||||  |   | |   |    ||   | |   | | |       ||||    || | ||        | | | || ||| |   ||   | | | |  | |    |     |||| |  | |   |   ||                                                                    
ATCTTCTACTTTGTTGGATTTGGATTGTTCTGCGTCGAATCATTGCTCAGCATCTGGGTTATCCAGgtcagtcctgcgaataacaaatactccctccgtttcatattataagactttctagcattgcccatattcatatagatgttaataaatctagacatatgtgtctagaaagtcttataatataaaacggagaaagtatgtttttatgaaataaattctcaagtagtctatctgagccgttttgacatttgtgaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315267|gb|GR830260.1|GR830260
EST:     GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG                         CAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
genomic: GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgattac ... tgctatacagCAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
EST: gi|10255230|gb|BE822996.1|BE822996
EST:     GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG                         CAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
genomic: GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgattac ... tgctatacagCAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
EST: gi|193400696|gb|FK368337.1|FK368337
EST:     GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG                         CAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
genomic: GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgattac ... tgctatacagCAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
EST: gi|23728768|gb|BU762445.1|BU762445
EST:     GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG                         CAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
genomic: GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgattac ... tgctatacagCAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
EST: gi|208043660|gb|GD843150.1|GD843150
EST:     GGGTCATTCAG                         CAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
genomic: GGGTCATTCAGgtttgattac ... tgctatacagCAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
EST: gi|10255778|gb|BE823488.1|BE823488
EST:     GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG                         CAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
genomic: GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgattac ... tgctatacagCAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
EST: gi|6964344|gb|AW433037.1|AW433037
EST:     GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATATGGGTCATTCAG                         CAAGTATACATGTACTTACGTTGCAGTGGTAACGCTGCTGACATGA
genomic: GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgattac ... tgctatacagCAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGA
EST: gi|14991928|gb|BI317601.1|BI317601
EST:     GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAG                         CAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG
genomic: GATTTGGATTATTCTGCATTGAAACGTTGATCAGCATTTGGGTCATTCAGgtttgattac ... tgctatacagCAAGTATACATGTACTTCCGTGGCAGTGGTAAGGCTGCTGAGATGAAACGG