Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATTGACATGCAGgttaatatgattatcatttattgtatatgtagcatggtttttagatttctaagcatgtttattatgttaatttgattgttgtgtctgtgcatatatgctg...

Basic information

species Glycine max
transcript GLYMA07G30360.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os12g42300.1 (Oryza sativa), 5'ss of exon 10
GACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATTGACATGCAGgttaatatgattatcatttattgtatatgtagcatggtttttagatttctaagc-atg-tttattatgttaatttgattgttgtgtctgtgcatatatgctg---
|||||| ||| | ||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||||| ||| | ||||| |||||||| ||||||||| ||||    |   ||  | |   ||  | |||    |||  ||  | ||  || ||| ||| | | || || | |    |||  |   | |   | || |||      
GACAAATTTCCGTACCCAAATTGAAGCTGACATAAGGCCATTCAGAGGTTTGCTGCTTGGGTTGTTCTTTGTGACTACAGGAACTTCTATTGACATGGAGgtattaactgtttacctccttttcacatgagcaatgagtt--aaatgactgagccatgatctgttttggtgaac--attacttcatat-cacttaaatgagaaat

upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G009715_T01 (Zea mays), 5'ss of exon 10
GACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATTGACATGCAGgttaatatgattatcatttattgtatatgtagcatggtttttagatttctaagcatgtttattatgttaatttgattgttgtgtctgtgcatatatgctg-----
 ||||| ||| |||| || |||||||| |||||||| ||||| || |||||| | |||||| |||| ||| | ||||| || ||||| ||||||||||||||  |  || ||||  |||      |    |  ||||||    || |   || ||   || ||||   |   |  ||  ||| | |       || | |      
AACAAATTTCCGGACACAAATTGAAGCTGACATAAGGCCATTCAGGGGCTTGTTGCTTGGGCTGTTCTTTGTGACTACAGGGACTTCCATTGACATGCAGgtacaattgtttatgtttttccaagtgaacaa-atggtt----gaatgtcaatcacactttttattcaagagtagttcatgtatttccatggctaagatatatag

upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 12
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 11
GACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATTGACATGCAGgttaatatgattatcatttattgtatatgtagcatggtttttagatttctaagcatgtttattatgttaatttgattgttgtgtctgtgcatatatgctg
 ||||| ||| | || || |||||||| || || || ||||||||||| || ||||| || ||||| ||| |||| || |||||||| ||||||||| |||| ||     ||||  |  |||| ||| | |    | | |||  | |   ||  ||| |   | |  |  |     |  ||||  |       | ||| |
AACAAATTTCCGAACACAAATTGAAGCTGATATTAGGCCATTTAGAGGTTTACTTCTCGGTTTGTTCTTTGTAACCACAGGAACTTCCATTGACATGGAGgtaaact--gttatactgcattgcataagaactcagttatttccactgaaaaatatgatacatttcatgttcatgctcatgtggttaaaatcttttgcag

upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 11
GACAAACTTCAGGACCCAGATTGAAGCAGACATAAGACCATTTAGAGGCTTGCTTCTTGGGTTGTTTTTTCTAACTACGGGAACTTCAATTGACATGCAGgttaatatgattat-------catttattgtatat--gtagcatggtttttag--atttctaagcatgtttattatgttaatttgattgttgtgtctgtgcatatatgctg
 ||||| ||| | || |||||||||||||| ||||| |||||||||||||| ||||||||||| |||||| ||||||| || ||||||||||||| |||||| ||| |||||||       ||| ||||||  ||  |||  ||  | | |||  || | | || ||  || || |||    ||||        ||  |            
AACAAATTTCCGAACACAGATTGAAGCAGATATAAGGCCATTTAGAGGCTTACTTCTTGGGTTATTTTTTGTAACTACAGGGACTTCAATTGACACGCAGgtgaatttgattatttaaagacatgtattgtccattagtaatatcatatgtagttatgtatgagtatagtt-ttttgtgtgcttgaccacaagatcaatat----------