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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttcttctgccgtttcctattataaaatggtatcagttggcaggttatgttcaacggttttgttcaattatataatgttgccggatggttgaatc...

Basic information

species Glycine max
transcript GLYMA07G09270.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09270.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G67300.1 (Arabidopsis thaliana), 5'ss of exon 13
TGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttcttctgccgtttcctattataaaatggtatcagttggcaggttatgttcaacggttttgttcaattatataatgttgccggatggttgaatc
 ||  | |||||||| ||||| |||||| | || || || || ||||| || |||||||| ||||| ||||| |||||  |||| ||||| |||||||||||||   |  |   |   ||  | ||||        |||   | ||   ||   | | | ||||   |   ||| |  ||| |||  |||  |       
CGCCTTAGGAGCTGGTCCAGTACCAGGTTTACTCCTCCCTGAGATCTTCCCAAGTCGAATCAGAGCAAAAGCGATGGCTTTCTGCATGTCTGTGCATTGGgtaacaatagtaaactcgttgattttat-------catcg--ttgcgttttcgttcctaaggttgcttaacattgttgaatcttgttggacag-------

upper sequence: GLYMA07G09270.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 13
TGCTCTCGGAGCTGGCCCAGTTCCAGGTCTCCTTCTACCAGAAATCTTTCCTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttcttctgccgtttcctattataaaatggtatcagttggcaggtt-atgttcaacggttttgt---tcaattatataatgttgccggatggttgaatc
|||||| || |||||||||||||||||||| || ||||||||||| || || |  |||||||| || ||||| ||||||||||||||||| ||||||||||||||  |     |  |  |  | || ||||||  | |   |   ||   |  |  |  |   || |||   |  | |  | |||  || |   || |    | 
TGCTCTGGGGGCTGGCCCAGTTCCAGGTCTTCTCCTACCAGAAATTTTCCCAAACCGAATAAGGGCAAAAGCTATGGCAGTCTGTATGTCTGTGCATTGGgtaatactt---ggttgcatgtttttttaaaattttttttttcctcatcctcgtcctttattcttctgtgagttgaattcaaaatcctggcatgtgatacttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58018453|gb|CX705195.1|CX705195
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|192327720|gb|FK021355.1|FK021355
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|19346368|gb|BM891248.1|BM891248
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|21595709|gb|BQ610581.1|BQ610581
EST:     CAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|8284412|gb|BE021971.1|BE021971
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|10231460|gb|BE800348.1|BE800348
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|192322087|gb|FK012191.1|FK012191
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|15286792|gb|BI470683.1|BI470683
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|21256350|gb|BQ453238.1|BQ453238
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|151399677|gb|EV269548.1|EV269548
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|15664632|gb|BI702003.1|BI702003
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|254319872|gb|GR830896.1|GR830896
EST:     ATGTCAGTGCATTGG                         GTGATAAATTTCCTTTGTTGGACTACTG-TCCTGCGTTTGCTGGAGAAACT
genomic: ATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTT-CTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACT
EST: gi|192322086|gb|FK012190.1|FK012190
EST:     TCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: TCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|254339875|gb|GR858000.1|GR858000
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|58017137|gb|CX703879.1|CX703879
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|192333446|gb|FK023975.1|FK023975
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|8284214|gb|BE021773.1|BE021773
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
EST: gi|19346670|gb|BM891550.1|BM891550
EST:     CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGG                         GTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT
genomic: CTAGTCGAATAAGAGCCAAAGCCATGGCAGTCTGTATGTCAGTGCATTGGgtaattttct ... tcttgtacagGTGATAAATTTCTTTGTTGGACTACTGTTCTTGCGTTTGCTGGAGAAACTT