Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCATGTGCGCATCCCTTCTTCAATGATCTGCGGGACCCAAATGCATGCTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgatttgaacttacattttggttaagtgatacatttcttgccttaggcattgctcatgtaagaaaacaatgcag

Basic information

species Glycine max
transcript GLYMA07G08320.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08320.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv15s0048g02010.t01 (Vitis vinifera), 5'ss of exon 12
GCTGCATGTGCGCATCCCTTCTTCAATGATCTGCGGGACCCAAATGCATGCTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgatttgaacttacattttggttaagtgatac-atttcttgccttaggcattgct--catgtaagaaaacaat-gcag
|  || ||||| |||| ||||||  ||||| |  | ||  ||||||| |||||||| ||||| || ||||| |||||||| ||||| |||||| ||||||||||| | ||      || | || |  |    |  |   | ||  ||  |    | ||| |  ||  |   |||    |  |||
GAGGCGTGTGCACATCACTTCTTTGATGATTTAAGAGAGACAAATGCCTGCTTGCCAAATGGTCGGCCTCTTCCTCCTTTATTCAATTTCACACCTCAAGgtaagctaatacaccatttccttataatcctcttctcttaattggtgattcttaccttggtatcacatgtcaaacttgtcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207761995|gb|GD734184.1|GD734184
EST:     CTTGCCTAATGGGCGACCTCCACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
genomic: CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
EST: gi|4285120|gb|AI440866.1|AI440866
EST:     CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
genomic: CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
EST: gi|213604378|gb|DB978222.1|DB978222
EST:     CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
genomic: CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
EST: gi|213612270|gb|DB976847.1|DB976847
EST:     CCTCTACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
genomic: CCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
EST: gi|14259911|gb|BG882819.1|BG882819
EST:     CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
genomic: CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
EST: gi|22927972|gb|BU545111.1|BU545111
EST:     CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
genomic: CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
EST: gi|207746055|gb|GD717781.1|GD717781
EST:     CTTGCCTAATGGGCGACCTCCACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
genomic: CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
EST: gi|14126698|gb|BG791136.1|BG791136
EST:     CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
genomic: CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG
EST: gi|8827250|gb|BE210980.1|BE210980
EST:     CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAG                         AACTGGCTGATGCACCTGAAGAGTTGCGCCTACGCCTCATTCCTGAGCATG
genomic: CTTGCCTAATGGGCGACCTCTACCTCCTTTGTTCAACTTCACATCTCAAGgtaagatgat ... aacaatgcagAACTGGCTAATGCACCTGAAGAGTTGCGCCAACGCCTCATTCCTGAGCATG