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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatcctctcctactcatcttccttgcattactgatttttttggtgatagaatacttgaccacattatttccttgtaaaatgttttaaatagatggataagtaatgctcttttatcatgttaacagttaatgaacttactctattcataactaactttacag

Basic information

species Glycine max
transcript GLYMA07G07610.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G01650.1 (Arabidopsis thaliana), 5'ss of exon 11
TTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatcctctcctactcatcttccttgcattactgatttttttggtgatagaatacttgaccacattatttccttgtaaaatgttttaaatagatggataagtaatgctcttttatcatgttaacagttaatgaacttactctattcataactaactttacag
| || ||||| |||||  ||||||||||||||||||| ||||| || || |||||||| ||||| ||||||||||||||  | ||  | ||  |||| ||||    ||| |     | | | |||  ||| | | |   |  ||  ||||| |  | | |   |   |  | ||         ||||    | |  |||| || | ||||                                                                        
TACTAAAGATCCCACGAATGTTTGATCCTTGGGGTGGCTACAGCATAATTGGATTTGGTGACATTATCTTACCAGGACTGCTTGTAACTTTCGCACTGAGgt----ttgca--ctgttaca-atctcctcttgcgc---tctctcacattattactatatcaagatctcaactaaactgagttattagaagcatacaaaa-gtatgaaatg-----------------------------------------------------------------------

upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 11
TTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatcctctcctactcatcttccttgcattactgatttttttggtgatagaatacttgaccacattatttccttgtaaaatgttttaaatagatggataagtaatgctcttttatcatgttaacagttaatgaacttactctattcataactaactttacag
| || ||||| || ||  ||||||||||||||||||| ||||| ||||| |||||||| || || |||||||| |||||  | |||||||| ||||||||||    |||       ||||| ||| |         || |||   | | ||  |    |||||   |   || | |      | || |||||    ||| | | |  |    ||                                                                    
TACTGAAGATCCCGCGAATGTTTGATCCTTGGGGTGGCTACAGCATCATTGGATTTGGTGATATTATCTTACCGGGACTGCTTGTGGCATTCTCACTAAGgt----ttgatcactgtaata-atcttt--------attttcaaagaagtatcgtcaattttgtgaacttaacatt-----gctttttttcccc-caaattatctagagcccattttgg---------------------------------------------------------------

upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S1_478V6.1 (Physcomitrella patens), 5'ss of exon 11
TTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatcctctcctactcatcttccttgcattactgatttttttggtgatagaatacttgaccacattatttccttgtaaaatgttttaaatagatggataagtaatgctcttttatcatgttaacagttaatgaacttactctattcataactaactttacag
| || ||  | ||| |  ||| |||||||||||| |||||||||||||| || ||||| |||||  |  | |||||  |  | ||  | || |   || ||||   |  ||  |  ||||    | |       | |        |  |    ||||| |   ||  | |  |   |  |  |       | |  | | | |                                                                                
TGCTGAAAGTTCCAAGGTTGTATGATCCTTGGGGAGGTTACAGTATCATTGGCTTTGGTGACATCCTACTCCCAGGGTTGCTTGTCTCCTTCTGCTTACGgtacgtt--gagattttaattttactttagtcgatgagtcgtgaggtttgttagatttgtagtgtattgggtttactagcttcgcgcagccatgatgacacg--------------------------------------------------------------------------------

upper sequence: GLYMA07G07610.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S124_16V6.1 (Physcomitrella patens), 5'ss of exon 11
TTCTCAAGATACCACGTCTGTTTGATCCTTGGGGTGGTTACAGTATCATCGGATTTGGGGACATAATCTTACCAGGACTTATAGTGGCATTTTCACTAAGgtagaattggaagtcataatacatcctctcctactcatcttccttgcattactgatttttttggtgatagaatacttgaccacattatttccttgtaaaatgttttaaatagatggataagtaatgctcttttatcatgttaacagttaatgaacttactctattcataactaactttacag
|||| ||  | |||||||| |||||||| |||||||| ||||||||||| || ||||| || ||  |  | ||||||||| | ||  | || |   || ||||              | | |||  |    |     | || ||  |||          |      ||| ||| |  |   ||||| | ||| ||| |   |  ||   |  | |                                                                   
TTCTTAAAGTTCCACGTCTTTTTGATCCATGGGGTGGCTACAGTATCATTGGTTTTGGCGATATTTTGCTTCCAGGACTTTTGGTTTCCTTCTGCTTACGgta----------ctccactgcatatttctttgtggttgttactgccatcga------gtggaagaataaaatgccagttaacattttgtccatgtgatgcgagtttgtttaaagt------------------------------------------------------------------