Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTTGCCTCCCATGCCGGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTATGCCTACAAGATCCTTTATGGAGTTTGTAATGTTCTCCAGgtaaactaagttcattttgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactgatgcaagctaccatttgtgcag

Basic information

species Glycine max
transcript GLYMA07G06780.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os01g43380.1 (Oryza sativa), 5'ss of exon 7
ATTCTTTGCCTCCCATGCCGGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTATGCCTACAAGATCCTTTATGGAGTTTGTAATGTTCTCCAGgtaaactaagttcattttg----tcagctaagaaaattgttctctt----gtaacttgttgagagttaaataactgatgcaagctaccatttgtgcag---
|| |  |||| |  |||||    ||||| ||||| |||||||| ||||| || |||| | ||||||| ||||| ||  |||| |||||||||||||| ||||  ||    |   |||||    |||      || || |   | ||    | ||  |||    || ||| |   || || |  |        |  ||    
ATACCCTGCCACTAATGCCTAATGATGGAGACACTTGGTCTGTGATGCAAAGCTGGGTTTTGCCTACGAGATCATTCCTGGAATTTGTAATGTTCTCAAGgtgcacattatctcttttggaattcaatagtcaacatagcagtattaagtggaagatgtcactagctaactg-ttggtgtatacatttcaaagcacaagta

upper sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G159053_T01 (Zea mays), 5'ss of exon 2
ATTCTTTGCCTCCCATGCCGGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTATGCCTACAAGATCCTTTATGGAGTTTGTAATGTTCTCCAGgta--aactaagttcatt------ttgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactgatgcaagctaccatttg-tgcag--
||||| ||   |  |||||    ||||| |||||||||||||| ||||| ||||||| | |||||||| | || ||  | || ||||| ||||| || |||||     || |||   |      ||  | | ||| |  |  |   |  | ||  |   | || ||  || ||         | |  ||| |  |      
ATTCTCTGTTACATATGCCTAATGATGGAGACACATGGTCTGTGATGCAAAGTTGGGTTTTGCCTACACGGTCATTCCTAGAATTTGTTATGTTTTCAAGgtatgggttatgttttgtggaaaattacctgttaa-agcacagccttgctttatttgactcagggtccaaaaagattaattggttctcatctaatatctga

upper sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 11
lower sequence: AT4G01210.1 (Arabidopsis thaliana), 5'ss of exon 12
ATTCTTTGCCTCCCATGCCGGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTATGCCTACAAGATCCTTTATGGAGTTTGTAATGTTCTCCAGgtaaactaagttcattttgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactga---tgcaagctaccatttgt--gcag
| || ||||| || ||||| |  ||||| || ||||||||||| |||||||| |||||  |||| |||||||||||  | |||||||| |||||||| |||||         ||  ||  |   | |     |   |||        |||  || ||   | |   | |   ||     | |||| |||  | ||
ACTCATTGCCACCAATGCCCGAGGATGGGGATACATGGTCTGTGATGCAGAGCTGGGCATTGCCAACAAGATCCTTCTTAGAGTTTGTCATGTTCTCAAGgtacttgtttaccacattacccattgattgtctcagtcttagcctctttggagaaagaagagtgcttaagagtgtgttttcccatctgtttgtag

upper sequence: GLYMA07G06780.2 (Glycine max), 5'ss of exon 11
lower sequence: Vv15s0046g01620.t01 (Vitis vinifera), 5'ss of exon 12
ATTCTTTGCCTCCCATGCCGGTAGATGGTGACACATGGTCTGTCATGCAGAGTTGGGCTATGCCTACAAGATCCTTTATGGAGTTTGTAATGTTCTCCAGgta--aactaagttcattt-----tgtcagctaagaaaattgttctcttgtaacttgttgagagttaaataactgatgcaagctaccatttgtgcag
|||| || || || ||||| |||||||| ||  ||||||||||||||||||| |||||| |||| ||  |||||||  | ||||||||||||||||| |||||     ||     |||      |||   |    ||  ||   |  || |   |  || | |  |   ||| |     |   |||||| ||     
ATTCCTTACCACCTATGCCTGTAGATGGAGATGCATGGTCTGTCATGCAGAGCTGGGCTTTGCCAACCCGATCCTTCCTAGAGTTTGTAATGTTCTCAAGgtactggatatagcaattgaggggtgtatacaggcaagtttagcccatttttcatctttcaaatct---taatttgaatattgtaccatctgcag--