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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCGATTTCGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCGTTCTCTTGGACATGTTgtcagtgctctaaacttattcactttattcagctgtaaacatctttaataggaacccgttttttctgtcctaactgtcctctttgttgacttttttgttc...

Basic information

species Glycine max
transcript GLYMA07G06160.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 5'ss of exon 14
AGCCGATTTCGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCGTTCTCTTGGACATGTTgtcagtgctctaaacttattcactttattcagctgtaaacatctttaataggaacccgttttttctgtcctaactgtcctctttgttgacttttttgttc
 || ||||| || |||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||  | ||||| || ||||||||| | ||| ||||||| |||    |    || || || |  |    ||   ||  | || || | |||     ||||  |   | |  | |  | | || ||||  |       
TGCAGATTTTGGTTCATTGGAGCTCTCCCCAGTCGATGGCCGGACTCTAACTGATTTTATGCACACAAGAGGTCTTCGGATGCGTTCTTTAGGATATGTTgtaagt----tggctttcttaacctcgtgtttcttagaaactattcaagatgaa-----ttttgatcatccatatcttttttatggtgacaatag-----

upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g01140.t01 (Vitis vinifera), 5'ss of exon 5
AGCCGATTTCGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCGTTCTCTTGGACATGTTgtcagtgctctaaacttattcactttattcagctgtaaacatctttaataggaacccgttttttctgtcctaactgtcc--tctttgttgacttttttgttc
 || ||||| || |||||||||||||||||||| ||||| |  || || |  ||||| ||||||||| | ||||| |||||||||||||| ||||||||||| |||| | ||  |   |    |||  |   || || |  ||||    | | |    |   |  |     ||||      | ||   | | ||| ||| | 
TGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATGTTgtaagtgttgtactcccctaggttttgattc-ctttacatgtcttagtaaagtatttctgcatcataaagaaactcctaagttttatctcaatttattgat-

upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 5'ss of exon 14
AGCCGATTTCGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCGTTCTCTTGGACATGTTgtcagtgctctaaacttattcactttattcagctgtaaacatctttaataggaacccgttttttctgtcctaactgtc--ctctttgttgacttttttgttc
 || ||||| || |||||||||||||||||||| ||||| || || || || ||||| ||||||||| | ||||| |||||||||||||| ||||||||||| |||||| ||  |   |    |||  |   || || |  ||||    | | |    |   |  |     ||||      | ||   | | ||| ||| | 
TGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCGGACGCTGACCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATGTTgtaagtgctgtactcccctaggttttgattc-ctttacatgtcttagtaaagtatttctgcatcataaagaaactcctaatttttatctcaatttattgat-

upper sequence: GLYMA07G06160.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S363_15V6.1 (Physcomitrella patens), 5'ss of exon 13
AGCCGATTTCGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCGTTCTCTTGGACATGTTgtcagtgctctaa---acttattcactttattcagctgtaaaca---tctttaataggaacccgttttttctgtcctaactgt-cctctttgtt--gacttttttgttc-------------------------------------------------------------------
 || || || || ||  | || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||||  ||||||||  | ||    || || ||   |  ||   ||    |  | |   |    |  |         ||||     |   |||| | | || |  || |    |||  |||   ||||  || |  |                                                                   
GGCAGACTTTGGATCCCTTGAGCTCTCACCAGTGGATGGACGTACTCTTACAGATTTCATGCACACTCGGGGTCTACAGATGCGTTCCTTGGGGAGAGTGgtaagcatttcaacacacaagattgcgtggctacattacatttgggtcgtttatctctaggtcgttgtatttgactcaagttcgtctcactgtaaagactaattagagccatcaaacaacctatctcggtcaatggaacataattgattgaatggaagttatgctcgacgttgcag