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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctctgttatcaaatattcgacaggtttacctgtcattacatattatttctgataacgcgaactccttatctatag

Basic information

species Glycine max
transcript GLYMA07G03930.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G015132_T01 (Zea mays), 5'ss of exon 11
GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctctgttatcaaatat--tcgacaggtttacctgtcattacatattatttctgataacgcgaactcct-tatctatag----------------------------
|| || ||    ||  | |||  ||| ||||| || |||||||||||||| || ||||||||| || |||||||||||||      ||| || |||    | |  | |  || ||| |    | | |  ||    |  |   |||||  |   |   | | || ||||                              
GTTACTGCAAATCGCTTGCTAGCATCGAAACAGACCATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCAgtatgtttctaacctaatttgtgatctacaagcc--ctttttgttggtgaacagcactgattcctttattacttctaactatgagttccttgtgtcactctctaatcaacag

upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G161969_T01 (Zea mays), 5'ss of exon 7
GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctctg--ttatcaaatattcgacagg---tttacctgtcattacatattatttctgat-----aacgcgaactccttatctatag
|| || ||    ||  | |||  ||| ||||| || |||||||||||||| || ||||||||| || |||||||||||||    | ||| || |||    ||  | ||  |  ||||     ||  |  |  |   | |  | |||| |         | |   | || ||| | ||
GTTACCGCAAACCGCTTGCTAGCATCTAAACAGACCATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCAAgtatgtttctaacctaatatatgatttacagagctcttttcgttggtgggacagcacttctaactttgagttgtgtcattctaatccacag

upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 12
lower sequence: AT3G13930.1 (Arabidopsis thaliana), 5'ss of exon 13
GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctctgttatcaaatattcgacaggtttacctg-tcattacatattatttctgataacgcgaactccttatctatag
|||||||| |||||  |   ||| ||||| |||||||||||||| ||||| || || || |||||||||||||||||| | | | ||||||| |    | | | ||  |  | |  || |   | | | |  ||  ||      | |  || |  |  |||| |  ||
GTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATTCCTCACTACTACTTGACCGTGGATACATGTGTTGACAAAATGATGGGgtaagtattaagttttagatcat--atattttgattaggtaagtggatgcta-----aacatagcta--tttttatatgcag

upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 12
lower sequence: AT1G54220.2 (Arabidopsis thaliana), 5'ss of exon 12
GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctctgttatcaaatattcgacaggtttacctgtcattacatattatttctgataacgcgaactccttatctatag
|||||||| |||||  |   ||| ||||| |||||||| ||||| || || ||||| || |||||||||||||||||||| | |  |||||| |      |   ||  |    |  || |   |   | |     ||      |  | ||||| |  | |  |  ||
GTCACAGCCTCACGTTTGGCATTCTCAAAGCAAACTATCCCTCACTATTACTTAACCGTCGATACATGTGTTGACAAACTTATGGCgtaagtataaaggtttggatgat--gtattttgagtcgctgtcaatgggtaagctaaactaagcgaatttgtaaa-tgcag

upper sequence: GLYMA07G03930.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 13
GTCACAGCTTCACGGCTACTATTATCAAAACAAACTATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctctgtta-tcaaatattcgacaggtttacctgtcattacatattatttctgataacgcgaactccttatctatag------------------------
 ||||||||||||| ||| ||||||| || || |||||||| ||||| ||||| ||||| |||||||||||||||||||| | |  || ||  |  |||  |   || ||  | |   | |||   | || || ||  | | |||| |    | ||  |  ||| |                          
ATCACAGCTTCACGCCTATTATTATCGAAGCAGACTATTCCCCATTATTATTTGACAGTGGATACATGTGTTGACAAACTTATGGAgtgagcattagttccttccatcttttaaaaaataaccca-cgtttca-atcttctgtgatgatctaagctgttgctctctctctctctctctctctctctctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298166277|gb|HO009248.1|HO009248
EST:     ATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG                         TTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
genomic: ATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctct ... ttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
EST: gi|192309362|gb|FK000570.1|FK000570
EST:     ATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAG                         TTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
genomic: ATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCACGAGgtaagtctct ... ttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
EST: gi|8827585|gb|BE211315.1|BE211315
EST:     ACAAACTCACGAG                         TTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT
genomic: ACAAACTCACGAGgtaagtctct ... ttatctatagTTTGCGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGGCTCCCGCAT