Sequence
atgc intronic sequence ATGC exonic sequenceATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgttgtgcttcattatcagttactcttatcattttatactttgtattaagacgaaagtgatggtgacagcctacaaattctaaataatttgttaaaaggat...
Basic information
species | Glycine max |
transcript | GLYMA07G03890.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G000645_T01 (Zea mays), 5'ss of exon 12
ATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgt-tgtgcttcattatcagttactcttatcattttatactttgtattaagacgaaagtga--tggtgacagcctacaaatt---ctaaataatttgttaaaaggat
||||||||| || || ||||||||||||||||| ||||| || || ||||| | || ||||||||||| | | || ||||||| ||| || ||||| || | | | ||| | || | | |||| | | | | | | | | | | | | | || | | ||||| | | |
ATCATTTGGGTCTGCACTGGAATTTGTTTGGTCATCAGAAGGAGAATATGCAATTAGGGAAAGTACATCAAGAATAAAGATTTTCAATAAATCGTTTCAGgtacatggtctgctttagtttattgttttt-ctatatattaattgcttaatcagatgcaaatttctcatttcttccatagttacctaaacattgcctctgg-----
upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G52360.2 (Arabidopsis thaliana), 5'ss of exon 12
ATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgttgt---gcttcattatcagttactcttatcattttat---actttgtattaa-----gacgaaagtgatggtgaca--gcctacaaa----------ttctaaa-taatttgttaaaaggat----------
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GTCATTTGGTTCTGGACTGGAATTTGTTTGGTCATCCGAGGGGGAGTGTGCGGTTAGAGAAAGCTCATCAAAGATTAAAATATTTAGCAAAAATTTCCAGgtttctaaatctttttctctctgatctaagccgttctgttcaaccctgtatctatggttgttggaagtattattgatactggtcatggagatagctatattcggatctggctcattcagaaaatacattttcag
upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G79990.1 (Arabidopsis thaliana), 5'ss of exon 16
ATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgtt-gtgcttcattatcagttactcttatcattttatactttgtattaagacgaaagtgatggtgacagcctacaaattct-aaataatttg--ttaaaaggat-------------------
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GTCATTTGGCTCTGCGCTAGAATTTGTTTGGTCATCTGATGGGGAGCATGCTGTCAGGGAAAGCTCGACAAAGATCAAGATCTTCAGCAAGAATTTCCAGgtttgtaattccttttggcacgttccttttccgactgattaactctaaagcttttgttttttgtgtcttattctgttatctgaaatacactaacctatgctgatacccttgtttaatttgcag
upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G15980.2 (Arabidopsis thaliana), 5'ss of exon 12
ATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgttgtgct----tcattatcag-ttactcttatcattttat----actttgtattaagacgaaagtgatggtgacagcctacaa--------attctaaataatttgttaaaaggat------------------
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ATCTTTTGGGTCTGGCCTGGAATTTGTTTGGTCATCTGAGGGGGAATGTGCGGTTAGAGAAAGCTCATCAAAGATAAAGATATTCAGTAAAAATTTCCAGgtt-tgctattctcattatggccttactcatactattttgttggagtatgattctagggttgaagaaattgcagatgcttgcaatagagacagctattactggcttattatattaataaaaggtggtgttttcag
upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 12
ATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgtt-gtgcttcattatcagttactctt--atcattttatactttgtattaagacgaaagtgatggtgacagcctacaaattctaaataatttgttaaaaggat-
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GTCTTTTGGTTCGGCATTGGAATTTGTATGGTCATCAGATGGTGAATATGCTGTCAGAGAAAGTACATCAAAGGTTAAGATTTTCAGTAAGAATTTCCAGgtttgtgtcccctcctttgtttctctctgatgagaatagattaggtgc-aatatatatatatatatgcatgtgtgtg---tgtgtgtgtgctgctgaaaacatt
upper sequence: GLYMA07G03890.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 5'ss of exon 12
ATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgttgtgcttcattatcagtt---actcttatcattttatactttgtattaagacgaaagtgatggtgacagcctacaaattctaaataatttgttaaaaggat
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ATCATTTGGCTCAGCGCTGGAATTTGTTTGGTCATCAGATGCAGAATATGCTGTGAGGGAAAGTACATCAAGGATTAAGATTTTCAGCAAAACATTCCAGgttttgatcctttcaaagtttagattctcacgacttattgatgggggcttttctccaagcaa-attagcaatgcttcttttgttgcaaagttgtttatctt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254341657|gb|GR852794.1|GR852794EST: CTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAG GAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAACGAATATTTGGTGGC
genomic: CTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgttgtgcttc ... tatatttcagGAAAAGAAGAGTATCCGACCAACTTTTTCAGCTGAACGAATATTTGGTGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCATTTGGTTCAGCTCTGGAATTTGTTTGGTCTTCAGATGGGGAGTATGCTGTAAGAGAAAGTACATCGAAGGTCAAAATTTTCAGCAAAAATTTCCAGgttgtgcttcattatcagttactcttatcattttatactttgtattaagacgaaagtgatggtgacagcctacaaattctaaataatttgttaaaaggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA