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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGTTGCTTCATGTCAGAACCTATGGGCGTTAATCATGGATGCAGGGACAGGTTTCACTGCCCAAGTTTACGAGCTCTCACCCTTCTTTCTCCATAAGgtaaatttcaatccattgcttttatttttctatttgtgtattgtttagaagacatgcttgctacacactttccaaccaacatacaattcacccaataatg...

Basic information

species Glycine max
transcript GLYMA07G01890.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01890.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 5'ss of exon 12
CGGTGTTGCTTCATGTCAGAACCTATGGGCGTTAATCATGGATGCAGGGACAGGTTTCACTGCCCAAGTTTACGAGCTCTCACCCTTCTTTCTCCATAAGgtaaatttcaatccattgcttttatttttctatttgtgtattgtttagaagacatgcttgctacacactttcc-----aaccaacata-caattcacccaataatg
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CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACGGGATTCACAGCCCAAGTTTACGAGCTGTCTCATGTTTTCCTCCATAAGgtaagtgctcagtgattg-tttagtgtttctgcttgt-tgtt-tttgaaggatctagttggccctcttcttttgtggaaattaacatggtcattggtattctacag