Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtttttcatttttctcctcctttttagatataatacttctattctctaattcactctgttacctttttttttcttgttgctaaag

Basic information

species Glycine max
transcript GLYMA07G01390.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os06g36650.1 (Oryza sativa), 5'ss of exon 11
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtt-tttcatttttctcctcctttttagatat-----aatacttctattctctaattcactctgtt--acctttttttt----tcttgttgctaaag---------------------------------------------------------------
    | || || ||  ||||  | |  ||||| ||  ||||  | |||||||||||||||||||||| ||| ||||||| ||||||||| || || ||||||| |||  | ||           |  | |  ||||      |   ||||  ||      || |||      |||||  | |      | |||     ||                                                                
AGGGTCATCAGGCAGCAATTCTCAAGTTGCACTGTGGTAACTATCGCTCACAGGGTTCCAACTGTAACAGACAGTGACAAGGTCATGGTACTTTCATATGgtaagttactacacacacgcatatcaatctgaatatctgaggaaggttctggtccagtcatcgctcatccgaaccttcctctgatggccctgtcatccaaactgcacatatataaactgcacatatttggatgattcaagctgatggcccttctgtttgtgcag

upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G113203_T01 (Zea mays), 5'ss of exon 10
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtttttca------tttttctcctcctttttagatataatacttctattctct------aat-tcactctg-----ttacctttttttttcttgt-tgctaaag-------------------------------------------------------------------------------
 || |||| || ||  | ||  | |  ||||| ||||||||  | ||||||||||| |||||||| | ||| ||||||| |||||||||||| ||||| |||||||| | ||      ||||  || |      |    | || | | | ||||  |      ||| ||| | ||     | | || |   |  ||| | || || |                                                                                
AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttatacaagacatttttcgtcatgtagcatctgcagaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgattttctaattgtgcag

upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G059159_T01 (Zea mays), 5'ss of exon 3
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtttttca------tttttctcctcctttttagatataatacttctattctct------aat-tcactctg-----ttacctttttttttcttgt-tgctaaag-------------------------------------------------------------------------------
 || |||| || ||  | ||  | |  ||||| ||||||||  | ||||||||||| |||||||| | ||| ||||||| |||||||||||| ||||| |||||||| | ||      ||||  || |      |    | || | | | ||||  |      ||| ||| | ||     | | || |   |  ||| | || || |                                                                                
AAAGTAATCAGGCAGCAGTTCTCAAGTTGCACGGTTATAACCATAGCTCACAGGGTACCAACTGTGACAGACAGTGACAAGGTCATGGTCCTGTCCTACGgtatgttatacaaaacatttttcgtcatgtagcatctgcagaaaagtccaattcattcctcggaatatcagtatgacagataaactatcaatgccttatatgatatattacaagtatatcaccaagcttactctatacgtgtatgtgtatatgtatgattcatgacgatgattttctaattgtgcag

upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G21250.2 (Arabidopsis thaliana), 5'ss of exon 11
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtttttcatttttctcctcctttttagatataatacttctattctcta-attcactctgttacctttttttttcttgttgctaaag
  ||| || ||| |||| |||||  | || ||||| |||||||| || || || || |||||||| ||||| ||||||||||||||||| ||||| | |||||        |  |||   ||| || ||  || |  ||   ||| ||   |    || |   | |  ||   ||||  | |||   |  
AGAATTATAAGAGAAGAGTTTGCAGACTGTACAGTGATAACAGTTGCACATAGAGTACCAACTGTCATAGACAGTGACATGGTCATGGTTCTCTCTTTTGgtaaaca----acattttctctcattctttcatctcttaaacctactcataatgaccaatgaatgagtttcggttttggttttggatag-

upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 22
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtt-tttcatttttctcct----cctttttaga-tataatacttctattctctaattcactctgtt---acctttttttttcttgttgctaaag
  ||| || || || |||||    || || || || |||||||| |||||||| ||||| || || ||||||||||||||||||||||||||||| |||||||||   || || |     |||    |  |||| || |||     || |  | |  |   ||   |      |   |   ||   ||| |  |  ||
AGAATTATCAGGCAGGAATTCTTGAACTGTACGGTGATAACAGTAGCTCACAGAGTTCCCACAGTTATAGATAGTGACATGGTCATGGTCCTCTCTTATGgtatgcaattccaatccaagcctaagccagttttggagtattgggtttttggtattaaccccaacttacataaaatatcggttggtttgattttgtag

upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g02440.t01 (Vitis vinifera), 5'ss of exon 10
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtt-tttcatttttctcct---cctttttagatataatacttctattct-ctaattcactctgtt---acctttttttttcttgttgctaaag
  ||| || ||||| |||||  | || || ||||| |||||||| |||||||| ||||| ||  | |||||||| |||||||||||||||||||| |||||||||   || || |     |||   ||  ||| |    | |   | | |  | ||||  ||   |      |   |   ||   ||| |  |  ||
AGAATTATCAGACAGGAATTCTCAAATTGTACAGTGATAACAGTAGCTCACAGAGTTCCCACACTCATAGATAGCGACATGGTCATGGTCCTCTCTTATGgtatgcaattccaatccaagcctaagccagttttggagcattgggtttttggtgctaacccaacttacataaaatatcggttggtttgattttgtag

upper sequence: GLYMA07G01390.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv09s0002g02430.t01 (Vitis vinifera), 5'ss of exon 11
CAAATAATTAGACAAGAATTTGCCAAATGCACAGTTATAACAGTGGCTCACAGGGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTCTCCTATGgtatgtttttcatttttctcctcctttttag---atataatacttctattctctaattcactct-gttacctttttttttcttgttgctaaag
  ||| || || || |||||  | || || ||||| || ||||| |||||||| |||||||| || || || ||||||||||||||||||||||| |||||||||   || |||   |||| |   ||| |   |     |  |  |  | |  |     || |  | | |  |  ||   ||| |  |  ||
AGAATTATCAGGCAGGAATTCTCAAACTGTACAGTGATTACAGTAGCTCACAGAGTTCCAACAGTCATGGACAGTGACATGGTCATGGTCCTCTCTTATGgtatgaaatt-attccactccgcagatttggggtactgggttttgttgatattgagccagctttcataaacactggttggtttgattttgtag