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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatcatattagcactgtaacaccaacatattctcttgaagttacttgagtctttttgtttgattatgtgcttttaaattttgcag

Basic information

species Glycine max
transcript GLYMA06G45160.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G45160.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G041181_T01 (Zea mays), 5'ss of exon 12
ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatcatattagcactgtaacaccaacatattctcttgaagttacttgagtctt-tttgtttgattatgtgcttttaaattttgcag
|||||||||||  |||||||||| || |||||||| || ||| |||| ||||||||||| || |||||   | |  ||||| ||        | ||    || || ||||   |||| ||| |    |  ||||     |  ||  |     |||||
ATATTCTACTTTGTTGGATTTGGACTGTTCTGTCTGGAATCATTGCTTAGCATCTGGGTCATCCAGgtcagttttctattatca--accgttctaa----ttttcctgaaccaacttcagtgtgacatacttgagccctt-tttggaccgcgtgcag

upper sequence: GLYMA06G45160.1 (Glycine max), 5'ss of exon 12
lower sequence: AT2G20840.1 (Arabidopsis thaliana), 5'ss of exon 11
ATATTCTACTTCATTGGATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatcatattagcactgtaacaccaacatattctcttgaagttacttgagtcttt--ttgtttgattatgtgcttttaaattt-tgcag------
||||| ||||||||||| |||||  | |||||||| |||||| |  | |||||||||||||| ||||||     | |    | |   |     ||      |   || ||        |||  ||      ||| |  |||  || |   | | ||  |      
ATATTTTACTTCATTGGGTTTGGGTTCTTCTGTCTGGAGTCACTCGTCAGCATCTGGGTTATTCAGgttccctcctttgctgaatcatttattcatgtagataagttaaaaaggaagaagtggttaacaagttgttgttgttgttgtgtgtgtgtgtgggaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162286177|gb|FC456625.1|FC456625
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGT
EST: gi|193337386|gb|FK303760.1|FK303760
EST:     CTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: CTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|31474417|gb|CD416445.1|CD416445
EST:     GATTTGNCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGT
EST: gi|209724206|gb|BW658112.1|BW658112
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|22928614|gb|BU545753.1|BU545753
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|9899156|gb|BE608183.1|BE608183
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|193318264|gb|FK285828.1|FK285828
EST:     GGTTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGT
EST: gi|192320764|gb|FK013854.1|FK013854
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|209700002|gb|BW661218.1|BW661218
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|213608211|gb|DB974909.1|DB974909
EST:     GATTTGGCCTTTGCCATCTCGAGTCAGTGCTGAGCATGTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|254347258|gb|GR853507.1|GR853507
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|209712375|gb|BW671227.1|BW671227
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|209723674|gb|BW662569.1|BW662569
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|15284739|gb|BI468630.1|BI468630
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
EST: gi|31459116|gb|CD401144.1|CD401144
EST:     GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAG                         CAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT
genomic: GATTTGGCCTTTTCTGTCTCGAGTCAGTGCTGAGCATCTGGGTTATACAGgtttttatca ... aattttgcagCAAGTATATATGTACTTCCGTGGCAGTGGCAAGGCTGCAGTTTTAAAGCGT