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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaagcagtatattcctttcatgaatatattctgttgacatgattacaagattaatctttcattttaatttcctag

Basic information

species Glycine max
transcript GLYMA06G20360.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os08g30740.1 (Oryza sativa), 5'ss of exon 12
CAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaagcagtatattcctttcatgaatatattctgttgaca-tgattacaagattaatctttcattttaatttcctag----
 || || ||||| || || ||||| || |||||||||||||| || ||||||||||| || || |||||||| || || || ||| |||| ||||||||||||   | | |   | |||   | ||    |   | |      |  | || |   |  | ||||  || | || | |||||     
TAATGTTAGAGCAGGTAGCTACAGTGGGGGAATGAAACGCCGGCTAAGTGTTGCAATAGCTCTAATTGGTGATCCAAAATTGGTCTTTCTTGATGAACCGgtaa--agaccgccaaatttgctacaaacttccttccaaacatcccttatcatgtg-ctgatctaacaatgta-tatcctacacag

upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G142249_T01 (Zea mays), 5'ss of exon 12
CAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgt------atgcaaagcagtatattcctttcatgaatatattctgttgacatgattaca-agattaatct--ttcattttaatttcctag---
 || |   |||| || || ||||||||||||||||| ||||| || |||||||| || || || ||||||||||| || || ||  |||| |||||||| ||      ||  |||  | |  |||  |||  |   || | ||  |||      |  || | || |||||   | | | ||  | | | |   
TAATGCTCGAGCAGGCAGCTACAGCGGAGGAATGAAGCGCCGGCTAAGTGTTGCGATCGCACTGATTGGTGACCCAAAATTGGTTTTTCTCGATGAACCTgtgaggaaatagaaaaaatttcattgttttgttccttagactcccttgtggccctgtcacatatcaatctaactaaatgtatatgctttgtag

upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 12
lower sequence: AT5G61690.1 (Arabidopsis thaliana), 5'ss of exon 10
------------------CAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaagcag-tatattcctttcatgaatatat-tctgttgaca--------tgattacaagattaatctttcattttaatttcctag
                   ||||| ||||| ||||||||||| || ||||||||||| || |||||||||||  | || ||||| || || || ||| | ||| | || |||||||||| |||  ||   | || |||| | |  | ||||| | ||| |  | |        | |||  |||||   |  || ||       | ||||
AAAACTGACAGGAGCGGCGAAAGTTAGAGCAGGAAGTTACAGTGGTGGAATGAAACGTCGACTCAGTGTTGCGGTAGCACTTATCGGCGATCCCAAGCTGgtcttcctagatgaaccggcatgtcaacttgctacattcttctt-taaatatgtgtctatatataaaaacaattaattttaagat-ggttgtttatacatggattctag

upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 12
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 12
CAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaagcagtatattcctttcatgaatatattctgttgacatgattacaagattaatctttcattttaatttcctag------
 ||| | || || ||||||||||| |||||||||||||| || |||||||||||| || | || |||||||| || ||| | ||| | ||||| ||||| ||||| ||     | |||||  || |||  ||| |  |   | |    || |     | ||   |  || | ||      |      
GAAAATCAGGGCAGGAAGTTACAGTGGAGGAATGAAACGGCGACTCAGTGTTGCAGTTTCTCTCATTGGTGATCCAAAGCTGGTCTTCCTGGACGAACCTgtatgtaac---atttattctgttgatgtttatttatttaagtccctcttccttttctcatgcgtacttgtcatacatgggttacag

upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 12
lower sequence: AT5G61730.1 (Arabidopsis thaliana), 5'ss of exon 12
CAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaagcagtatattcctttcatgaatatattc---tgttgacatgattacaagattaatctttcat-----tttaatttcctag------------------------
 ||| | ||||| ||||||||||| || ||||||||||| || || ||||||||||| || || |||||||| || ||| | ||  |||| ||||||||||| || ||      | |||||| || |   | | ||    | ||    | |||  || | | |  ||  ||     |  |||||  |                          
GAAAATTAGAGCAGGAAGTTACAGTGGTGGAATGAAACGTCGGCTGAGTGTTGCAATAGCACTCATTGGTGATCCCAAGCTGGTTTTTCTAGATGAACCGgtctgtaatatgcaacattcctctcttttttttttttctttttttttttaattttaaaaatgagtttatataaacatcaaatttttttttattctaacatttgtggattctag

upper sequence: GLYMA06G20360.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 12
CAAAGTGAGAGCTGGAAGTTACAGCGGAGGAATGAAACGCCGTCTCAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaagcagtatattcctttcatgaatatattctgttgacatgattacaagattaatctttcattttaatttcctag
|||| |||||||||| ||||| || ||||||||||||||||| || |||||||| || || || |||||||| || ||||| |||||| |||||||||||||||||| |  || | | | ||    |    || ||   || |  |  ||     ||      ||  |||| ||||  |||
CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatgcagactag-agacttctcctttctgcatgtttctttaatgtatttgtttcatacgaggtttcttttgatttg-tag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208276894|gb|GE077429.1|GE077429
EST:     TATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: TATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: gi|6666498|gb|AW277892.1|AW277892
EST:     CCTAAGTTAGTCATTCTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: CCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: gi|193536829|gb|FK492295.1|FK492295
EST:     TTGCAATTGCTCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: gi|193417501|gb|FK382927.1|FK382927
EST:     CTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: CTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: gi|193415176|gb|FK380094.1|FK380094
EST:     TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: gi|193661639|gb|FK602593.1|FK602593
EST:     TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: gi|193364390|gb|FK328895.1|FK328895
EST:     TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: gi|193345104|gb|FK309602.1|FK309602
EST:     TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
EST: gi|120494951|gb|EH223118.1|EH223118
EST:     TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCG                         ACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA
genomic: TTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAACCGgtatgcaaag ... aatttcctagACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATTGAA