1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TTTCTCTTTTTCTGGAGTCAGGTGTCCTGGTCGTGCTGAACCATATTCTGACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAGgtaaatcaattcctttctgaactttagattcctgtatgcccgcttattttattgttaaatattttttattttttgcag
species | Glycine max |
transcript | GLYMA06G17050.4 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAG ATAGAGGTTGAAACCGTTGATCGAACTGGAACATTCTTGGGATCCTTATGGEST: gi|208073107|gb|GD868606.1|GD868606
genomic: ACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAGgtaaatcaat ... ttttttgcagATAGAGGTTGAAACCGTTGATCGAACTGGAACATTCTTGGGATCCTTATGG
EST: ACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAG ATAGAGGTTGAAACCGTTGATCGAACTGGAACATTCTTGGGATCCTTATGGEST: gi|254336635|gb|GR842814.1|GR842814
genomic: ACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAGgtaaatcaat ... ttttttgcagATAGAGGTTGAAACCGTTGATCGAACTGGAACATTCTTGGGATCCTTATGG
EST: ACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAG ATAGAGGTTGAAACCGTTGATCGAACTGGAACATTCTTGGGATCCTTATGG
genomic: ACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAGgtaaatcaat ... ttttttgcagATAGAGGTTGAAACCGTTGATCGAACTGGAACATTCTTGGGATCCTTATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTCTTTTTCTGGAGTCAGGTGTCCTGGTCGTGCTGAACCATATTCTGACGAAGCAATTGCTCTGATGAGGAGAAAGATAATGCAAAGAGATGTTGAGgtaaatcaattcctttctgaactttagattcctgtatgcccgcttattttattgttaaatattttttattttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG