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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACAAGAAATATTGGAGCTTTACCTTCAAGATAAACCATTGGCTGATGATATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAGgtgaataatttttcaatacatgtgacatgaccctccttccattctttttcaaatttcattcacgactgtgttgtataattattccaaactag

Basic information

species Glycine max
transcript GLYMA06G13140.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13140.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G53170.1 (Arabidopsis thaliana), 5'ss of exon 12
CGACAAGAAATATTGGAGCTTTACCTTCAAGATAAACCATTGGCTGATGATATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAGgtgaataatttt--tcaatacatgtgacatgaccctccttccattctttttcaaatttcattcacgactgtgttgtataattattccaaactag-----------------------------------
||  |||| || ||||| || ||||| ||||  |||||  || | || ||| | ||| ||||| |||||||||||||||| || ||||||||||| || ||||| |   ||   || |||  |      |   |  |||   ||||          ||| ||    |||    | |  |  |      |   |                                    
CGCGAAGAGATTTTGGAACTCTACCTCCAAGGCAAACCTATGTCAGAAGATGTTGATGTTAAAGCAATTGCTCGTGGAACTCCTGGATTCAATGGTGCTGgtgagtttcttaaatctataactacagtttagtcaccctgaaattcagaagtgt-cttcttttgtcactaacctatgaagattcaatgactcaccacatttttcccaatctcaccaaacttttttccag

upper sequence: GLYMA06G13140.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv16s0050g02630.t01 (Vitis vinifera), 5'ss of exon 12
CGACAAGAAATATTGGAGCTTTACCTTCAAGATAAACCATTGGCTGATGATATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAGgtgaataat-ttttcaatacatgtgacatgaccctccttccattc---tttttcaaatttcattcacgactgtgttgtataattattccaaactag----------------------------------------------------------
|| ||||| ||||||||||| || || || |||||||||||| |||||||| ||||| | ||| ||||||||||||| |||||||| ||||||||||| ||||| |  | ||||  || |   | | ||  |  | | | ||||    || |  | |    ||   |  |          |    | | ||| | |                                                          
CGTCAAGAGATATTGGAGCTCTATCTGCAGGATAAACCATTGTCTGATGATGTAGATGTCAAAGCAATTGCTCGTGGCACCCCAGGGTTCAATGGGGCTGgtgagttttctttttcattctattcaaatatcatttcattcatttagattctcaagagcagatgtccagcctatgaacgcatccctgcaaaaattggctggacatgtcaggacacactcatcaatgattctcatttctattgcttctcactcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22523190|gb|BU082001.1|BU082001
EST:     TATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAG                         ATCTTGCAAACCTGGTAAACATTGCTGCC
genomic: TATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAGgtgaataatt ... tccaaactagATCTTGCAAACCTGGTAAACATTGCTGCC
EST: gi|22523127|gb|BU081938.1|BU081938
EST:     TATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAG                         ATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCTGTCGAAGGTG
genomic: TATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAGgtgaataatt ... tccaaactagATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCTGTCGAAGGTG