Sequence
atgc intronic sequence ATGC exonic sequenceTATGCGCAAGGTTTTGTCTAAAAATCCTCAAGTAGAGCAGCAAAAATTACACAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGgttagtgtttgttctattgatttgtttatattgcacaagttttcagcttttagcttgcaaattttgatgttttctgtagtgtctcaagaggcatgattcttcagaagtttctttttttaattgtcctttctcaatataccattctcttactaattatcttctttgttgcag
Basic information
species | Glycine max |
transcript | GLYMA06G10060.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G10060.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 5'ss of exon 9
TATGCGCAAGGTTTTGTCTAAAAATCCTCAAGTAGAGCAGCAAAAATTACACAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGgt-tagtgtttgttctattgatttgtttatattgcacaagttttcagcttttagcttgcaaattttgatgttttctgtagtgtctcaagaggcatgattcttcagaagtttctttttttaattgtcctttctcaatataccattctcttactaattatcttctttgttgcag
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TATGCGCAAGGTTTTATCCAAAAATCCTCAAATAGAGCAGCAAAGGTTGCATAGAAGAGTGTTTCTGGACTATATCGATCCAGAGAACCAGGCCCTCTTGgtatggccatcatgcagtttttcccatta-attgatcatactttca-taaaaagttta-----tttattattatttattttattttatgagcaagattgcttttgga-----------------------------------------------------------------
upper sequence: GLYMA06G10060.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 12
TATGCGCAAGGTTTTGTCTAAAAATCCTCAAGTAGAGCAGCAAAAATTACACAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGgttagtgtttgttctattgatttgtttatattgcacaagttttcagcttttagcttgcaaattttgatgttttctgtagtgtctcaagaggcatgattcttcagaagtttctttttttaattgtcctttctcaatataccattctcttactaattatcttctttgttgcag
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TATGCGTAAGGTTTTAGCCAAAAATCCTCAAGTAGAGCAGCAAAGGTTGCATAGAAGAGTGTTTCTGGACTATATTGATCCAGAGAACCAGGCTCTTTTGgtaaggccatcatgca---atttttttccatt----aattgatcatattttcataaagagggtttgttatcatctct----tactgagcaagatggctttctggaagagat------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9566106|gb|BE475544.1|BE475544EST: ACAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATG ATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGT
genomic: ACAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGgttagtgttt ... tttgttgcagATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TATGCGCAAGGTTTTGTCTAAAAATCCTCAAGTAGAGCAGCAAAAATTACACAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGgttagtgtttgttctattgatttgtttatattgcacaagttttcagcttttagcttgcaaattttgatgttttctgtagtgtctcaagaggcatgattcttcagaagtttctttttttaattgtcctttctcaatataccattctcttactaattatcttctttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA