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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTAGGAAAAGCATTGAATCACCTTCAGCATGGAAATCTCCTTGGTTCATGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtaggttctgttggataataattttcttgaagtagattttaattcaccacaataaaaacagagcatttttacag

Basic information

species Glycine max
transcript GLYMA06G08660.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G08660.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv11s0016g03750.t01 (Vitis vinifera), 5'ss of exon 9
TTTTAGGAAAAGCATTGAATCACCTTCAGCATGGAAATCTCCTTGGTTCATGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtaggttctgttggataataattttcttgaa-----gtagattt-------taattcacca-caataaaa--acagagcatttttacag------
| |||  | | | |||||||| || ||||||||||| ||||||||||| |||||| ||||| |  |  | || || |||||||| ||  | |||| ||||||| |  |   ||   | | |  | | ||| || |      | | || |       |||| |     |||||||   ||| | || ||            
TATTAAAAGAGGAATTGAATCTCCATCAGCATGGAAGTCTCCTTGGTTTATGAACTCTTTTCTCCCTGGACCAAGAATTGATACAGATGTGACAACTGAGgtattccaacatccactagttgcttactttgtttagtttgtgcaaatgtatataggtaatcctttgtcaataaacttacaaaacagttgctttatttgca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208169071|gb|GD971428.1|GD971428
EST:     TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG                         GATTTTGGGTATTTC
genomic: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGTATTTC
EST: gi|193493167|gb|FK460029.1|FK460029
EST:     TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG                         GATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGG
genomic: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGG
EST: gi|193326388|gb|FK291499.1|FK291499
EST:     TGAACACTTTTT-GTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG                         GATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAAT
genomic: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAAT
EST: gi|208076846|gb|GD877385.1|GD877385
EST:     GAACACTTTTTTGTTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG                         GATTTTGGGTTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGG
genomic: GAACACTTTTTTGT-CCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGT-ATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGG
EST: gi|193712978|gb|FK649245.1|FK649245
EST:     TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAG                         GATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGG
genomic: TGAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGgtactgtagg ... atttttacagGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGG