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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATTTGGAGCAGTTTTGGCTTCTATACCTTTGCCAATCATGGCAGCAATGAACTGTTTATTCTTTGGCTATGTCTgtaagttctctctaactatctgtctttgtagctttggcaatccatagaacttgacaagagtttgcaacttgggatgtgcag

Basic information

species Glycine max
transcript GLYMA06G04990.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04990.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g08930.t01 (Vitis vinifera), 5'ss of exon 12
GAAAATTTGGAGCAGTTTTGGCTTCTATACCTTTGCCAATCATGGCAGCAATGAACTGTTTATTCTTTGGCTATGTCTgtaagt-tctctctaactatctgtctttgtagctttggcaatccatagaacttgacaa-gagtttgcaacttgggatgtgcag-----------------
||||||||||||| || || || || ||||||||||||||||| |||||  || ||||| | ||||||| |||||| ||||||| ||  | |     ||||    ||     |   |  ||    ||  |  | |  ||||||       | |||                       
GAAAATTTGGAGCCGTATTTGCCTCAATACCTTTGCCAATCATAGCAGCTTTGTACTGTGTCTTCTTTGCCTATGTTTgtaagtatcattgtttacttctgctgatggtatatcaactgtcttgtgatttccatattgagtttatttacagtgattaattttcataaaccgtgttgaa