Sequence
atgc intronic sequence ATGC exonic sequenceGTCAAAGCCTAGTGTGATGCCACATGAGAAAGAGGAGCTACTTAATGCTGCTGTTTATCGTGTCGATGCATTGGAAGCAGAGTTGATTGCTACAAAGAAGgtatggactctgttgtatgcttattattaatgtgcattgctcaataacttttggtgtatatttaaagattactgtgttcaacttcataaacag
Basic information
species | Glycine max |
transcript | GLYMA06G03300.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G75370.2 (Arabidopsis thaliana), 5'ss of exon 12
GTCAAAGCCTAGTGTGATGCCACATGAGAAAGAGGAGCTACTTAATGCTGCTGTTTATCGTGTCGATGCATTGGAAGCAGAGTTGATTGCTACAAAGAAGgtatgga---------------ctctgttgtatgcttattattaatgtgcattgct--caataacttttg-gtgtatat-ttaaagattactgtgttcaacttcataaacag
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CTCGAAGCGTCATGAGATGCCGCGTGAGAAAGAGGAGTTGCTTAATACAGCTGTTTATCGCGTGGATGCACTTGAAGCAGAGCTCATCGCTACAAAAAAGgtctaaaggaaacctctcaattccatgttaaatgacttttattaattaatatgaaaagcaactgtctttgtgtgtgtatattaacgccaacactctccaatgattcag----
upper sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 12
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 11
GTCAAAGCCTAGTGTGATGCCACATGAGAAAGAGGAGCTACTTAATGCTGCTGTTTATCGTGTCGATGCATTGGAAGCAGAGTTGATTGCTACAAAGAAGgtatggac-tctgttgtatgcttattattaatgtgcattgct--caataacttttggtgtatatttaaagattactgtgttcaacttcataaacag
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CTCAAGGAAATCCGAGATGCCTCACGAGAAAGAGGAGTTGCTGAATGCTGCTGTATATCGTGTGGATGCACTAGAAGCAGAGCTCATCACCACGAAGAAGgtttaaaaatctatgatatgattttaaaccctgaatgatattgataatgagtcattatgaaccttgtaataaccgaatatcggtgttgatgagcag
upper sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 5'ss of exon 12
GTCAAAGCCTAGTGTGATGCCACATGAGAAAGAGGAGCTACTTAATGCTGCTGTTTATCGTGTCGATGCATTGGAAGCAGAGTTGATTGCTACAAAGAAGgtatggactctgttgtatgcttattattaatgtgcattgctcaataacttttggtgtatatttaaagattactgtgtt---caacttcataaa--cag------
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GGCAAAGCCATTCAAGATGCCTCATGAGAAAGAAGAGTTGCTGAATGCTGCTGTTTGTAGGGTGGATGCCTTAGAAGCAGAGCTAATTGCTACAAAGAAGgta--acttcatctgaactgatttaatttatttgca--gcccatggatttacaaaatcaatacaatgcttttctgatttcacaaatttacaaaattagccatgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|5677847|gb|AI938977.1|AI938977EST: CTGTTTATCGTGTCGATGCATTGGAAGCAGAGTTGATTGCTACANAGAAG GCTNTGTACGAAGCTTTGATAAGACAAGAAGAGCTTATGGCATATATAGAC
genomic: CTGTTTATCGTGTCGATGCATTGGAAGCAGAGTTGATTGCTACAAAGAAGgtatggactc ... tcataaacagGCTTTGTACGAAGCTTTGATAAGACAAGAAGAGCTTATGGCATATATAGAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAAAGCCTAGTGTGATGCCACATGAGAAAGAGGAGCTACTTAATGCTGCTGTTTATCGTGTCGATGCATTGGAAGCAGAGTTGATTGCTACAAAGAAGgtatggactctgttgtatgcttattattaatgtgcattgctcaataacttttggtgtatatttaaagattactgtgttcaacttcataaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG