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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCTTATGGATGTCGTGATTCTTCATGCAGgtggttattagtacaatttattcaacagattacttttctcttctattaattgaattgacttaaattgtgtgtgtgtaatattcattattacag

Basic information

species Glycine max
transcript GLYMA06G03040.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os03g14690.1 (Oryza sativa), 5'ss of exon 12
TCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCTTATGGATGTCGTGATTCTTCATGCAGgtggttattagtacaatttattcaacagattacttttctcttctattaattgaattgacttaaattgtgtgtgtgtaatattcattattacag
|||| ||||||||||| || || ||||| || || |||||||||||||||||||| || |||||   ||||||||||| ||| |||||| |||| ||  |||       || | || ||    |  | |  || ||| | | |  ||||   |    | |||       |   |||     |  |   |  ||
TCTTTTCAATCTATACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGAGCTTTTTGGTAAATCTGCTTATGCATGCCGTGATCCTTCTTGTGGgta------agaaaaagtttcaaacaaaaccacgtttttatccctttaaaaaagaatatttatgcctacttattgtttgtcttgtggatttag

upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os10g10500.1 (Oryza sativa), 5'ss of exon 12
TCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCTTATGGATGTCGTGATTCTTCATGCAGgtggttattagtacaatttattcaacagattacttttctcttctattaattgaattgacttaaattgtgtgtgtgtaatattcattattacag
|||| ||||| || || ||||||||||| ||||| |||||||| || ||||||||||| |||||   |||||| ||||  || |||||| |||| ||  |||          |  |  | || ||| | | | ||        ||||   ||  ||  || |||||   ||| | |   |||  ||  || ||
TCTTTTCAATTTACACTGGGTTGATATACAACGAATTTTTCTCAGTCCCATTTGAACTCTTTGGTAAATCTGCCTATGCGTGCCGTGATCCTTCTTGTGGgta---------aggagcttttgaactgctaatttgcaaaccttatttgatgccttt-ctaaaatttaatgt-tctgccattgttt--tatag

upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G058910_T01 (Zea mays), 5'ss of exon 12
TCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCTTATGGATGTCGTGATTCTTCATGCAGgt--ggttattagtacaatttattcaacagattacttttctct---tctattaattgaattgacttaaattgtgtgtgtgtaatattcattattacag
| || |||||||| || || || ||||| || || |||||||||||||||||||  || || ||   |||||| |||| ||| ||||||||||| |||||||  ||  | |   | ||   |  | |  | |||  | | | |   | |    | | |  || || |  |  | |        |  ||||        
TTTTTTCAATCTACACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTCGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGCAGgtaaggaaaatgagataaagaagcctaatgtttatatatttataaatttgcacacttatctggctcat-taatttccacactttggtcatag------

upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G104418_T01 (Zea mays), 5'ss of exon 3
TCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCTTATGGATGTCGTGATTCTTCATGCAGgtggttattagtacaatttattcaacagattacttttctcttctattaattgaattg---acttaaattgtgtgtgtgtaatattcattatt-acag
| || |||||||| || || || ||||| || || |||||||||||||||||||  || |||||   |||||| |||| ||| ||||||||||| || ||||       || | |||  | | || | |   || | ||  | |||| || ||| ||   | |||  | |    |   |        || || | ||
TTTTTTCAATCTACACAGGATTAATATACAATGAATTTTTCTCTGTTCCATTTGGGCTTTTTGGTAAATCTGCCTATGCATGCCGTGATTCTTCTTGTAGgta------aggaaaatgaaataaataaac--ctatgcttatttatttatagaactgcacatttatctggctcattaatttccccacttgttcatag

upper sequence: GLYMA06G03040.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv18s0001g13410.t01 (Vitis vinifera), 5'ss of exon 12
TCTTCTCAATCTATACCGGGTTGATATATAACGAGTTTTTCTCTGTTCCATTTGAACTATTTGGACCATCTGCTTATGGATGTCGTGATTCTTCATGCAGgtggttattagtacaatttattcaacagattacttttct-cttctattaattgaattgacttaaattgtgtgtgtgtaatattcat-tattacag
| |||||||| || || || ||||||||||| || || || ||||| || |||||||||||||| || ||||| |||| |||||  ||  |||| ||||||       |   ||||    || |  | |||  | | |  | | | ||  |   |   | ||  |||   |      | | ||  | | || |||
TGTTCTCAATATACACAGGATTGATATATAATGAATTCTTTTCTGTCCCTTTTGAACTATTTGGGCCCTCTGCCTATGAATGTCCCGACCCTTCCTGCAGg-------tcaaacaagcacttaagaaaattgttatgccaccttttttcctcccaactatttgtattacttacactcactttttttctgttccag