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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGATATCACTTCAATTTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgtttttgtgaaaatttctccttgattgtttttgtatcttgttcttgagttttaatcttacctccccactttctgcag

Basic information

species Glycine max
transcript GLYMA05G36040.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600182|gb|DB976057.1|DB976057
EST:     TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
genomic: TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
EST: gi|58017252|gb|CX703994.1|CX703994
EST:     TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
genomic: TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
EST: gi|213599494|gb|DB975727.1|DB975727
EST:     TCGCGAAAGCTCATTACACCTCCTCTCACAATAAG-ATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
genomic: TCGCGAAAGCTCATTTGTTCTCCTCTCACAAT-GGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
EST: gi|58017426|gb|CX704168.1|CX704168
EST:     TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
genomic: TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
EST: gi|58020763|gb|CX707505.1|CX707505
EST:     TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
genomic: TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
EST: gi|209703851|gb|BW670733.1|BW670733
EST:     TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
genomic: TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
EST: gi|10253962|gb|BE821672.1|BE821672
EST:     TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
genomic: TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
EST: gi|5753594|gb|AI960881.1|AI960881
EST:     TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCC
genomic: TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCC
EST: gi|213604268|gb|DB983440.1|DB983440
EST:     TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATG                         TTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT
genomic: TTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgttt ... ctttctgcagTTCTCTATGTTCCAAGCTATGAATCAGTGAGTCTCAAATTCCGTGCCTAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATTTCTTGAAGGCAGTGGATGAAGTAACCTCGAAGGATATCACTTCAATTTCGCGAAAGCTCATTTGTTCTCCTCTCACAATGGCATCATATGGAGATGgtatttgtttttgtgaaaatttctccttgattgtttttgtatcttgttcttgagttttaatcttacctccccactttctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG