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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCACTGTAAAATATTCACCGTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATGCAGTGgtactgttgcaatccaacttattagtttgcaactttatcttaatttgttgcttctaactagtagaatagtatgacacatatctcataattttcttccaactgttacag

Basic information

species Glycine max
transcript GLYMA05G35310.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6069441|gb|AW099127.1|AW099127
EST:     TGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATGCAGTG                         CCCATGCCAAGTTATGCACAACCATCAAAATCAACAAATCCATTTGATGTC
genomic: TGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATGCAGTGgtactgttgc ... actgttacagCCCATGCCAAGTTATGCACAACCATCAAAATCAACAAATCCATTTGATGTC
EST: gi|51343437|gb|CO984170.1|CO984170
EST:     AGCATGGGTATCTCAATTCAATACAATAATGCAGTG                         CCCATGCCAAGTTATGCACAACCATCAAAATCAACAAATCCATTTGATGTC
genomic: AGCATGGGTATCTCAATTCAATACAATAATGCAGTGgtactgttgc ... actgttacagCCCATGCCAAGTTATGCACAACCATCAAAATCAACAAATCCATTTGATGTC
EST: gi|23728362|gb|BU762232.1|BU762232
EST:     TGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATGCAGTG                         CCCATGCCAAGTTATGCACAACCATCAAAATCAACAAATCCATTTGATGTC
genomic: TGGGTCCACCACCTAGCATGGGTATCTCAATTCAATACAATAATGCAGTGgtactgttgc ... actgttacagCCCATGCCAAGTTATGCACAACCATCAAAATCAACAAATCCATTTGATGTC