1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCTCTTCATCATCCTTTCACTGCACCAAATCCTGAAGACATGAATGACCTTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAGgtaagtgtcatttctgattactttcctatctctgtaagctgtgagacttgatgatttgatcactgatatctgtattaataacagttttaatttgtgcctattttttgtcag
species | Glycine max |
transcript | GLYMA05G34820.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGCTTATGACATGGTTTACAATGGGGTGGAG ATTGGTGGGGGAAGTCTGAGAATTTATAAACGTGATATACAACAAAAGGTTEST: gi|58021999|gb|CX708740.1|CX708740
genomic: GGCTTATGACATGGTTTACAATGGGGTGGAGgtaagtgtca ... tttttgtcagATTGGTGGGGGAAGTCTGAGAATTTATAAACGTGATATACAACAAAAGGTT
EST: TTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAG ATTGGTGGGGGAAGTCTGAGAATTTATAAACGTGATATACAACAAAAGGTTEST: gi|7284094|gb|AW596693.1|AW596693
genomic: TTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAGgtaagtgtca ... tttttgtcagATTGGTGGGGGAAGTCTGAGAATTTATAAACGTGATATACAACAAAAGGTT
EST: TTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAG ATTGGTGGGGGAEST: gi|209696720|gb|BW666962.1|BW666962
genomic: TTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAGgtaagtgtca ... tttttgtcagATTGGTGGGGGA
EST: TTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAG ATTGGTGGGGGAAGTCTGAGAATTTATAAACGTGATATACAACAAAAGGTT
genomic: TTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAGgtaagtgtca ... tttttgtcagATTGGTGGGGGAAGTCTGAGAATTTATAAACGTGATATACAACAAAAGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTTCATCATCCTTTCACTGCACCAAATCCTGAAGACATGAATGACCTTGCATCTGCTCGTGCGTTGGCTTATGACATGGTTTACAATGGGGTGGAGgtaagtgtcatttctgattactttcctatctctgtaagctgtgagacttgatgatttgatcactgatatctgtattaataacagttttaatttgtgcctattttttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG