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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaacttagattatttgctttttgttatagtgcccatattcaaatgttcatttgattagatattagattccctctatacaatgatcacaagctcacaacaatctgattgtgctag

Basic information

species Glycine max
transcript GLYMA05G32460.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G32460.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
TCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaacttagattatttgctttttgttatagtgcccatattcaaatgttcatttgattagatattagattccctctatacaatgatcacaagctcacaacaatctga--ttgtgctag
|||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||| || |||||||| || ||||||||||||||||    || | ||       | | ||| ||     |  || ||   |   | |      |||||   ||   ||   | | |||||   | || |  |  |  |||  ||||| |||
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaa----tatacta------atatattacagcttgtaggtttaagcttctttct------atattgagtttgttcctca-attgatcctgaactgatcaagacatgaacttgtggtag

upper sequence: GLYMA05G32460.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 5'ss of exon 12
TCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaacttagattatttgctttttgttatagtgcccatattcaaatgttcatttgattagatattagattccctctatacaatgatcacaagctcacaacaatctgatt-gtgctag
||| |||||||| ||||| ||||| || ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| | || || || |||||||||||||  |||||   |        |     |     | | | |     |||  | |  |   ||    || |   |  | |    || |  |  ||     |     | ||    ||||
TCACATCATTCACATCGACTTTGGTTTTATGCTCTCCAATTCTCCTGGTGGTGTCAACTTTGAAAGTGCTCCTTTCAAACTTACGCGCGAGCTTCTTGAGgtaac-cttagtaaacacaacaatctcagtcaattctacagt-ggccgtttctgtattgcaattaaggactgattgaacatggggacctgactctttgtccggatcgtttcaaactag

upper sequence: GLYMA05G32460.1 (Glycine max), 5'ss of exon 12
lower sequence: PP1S263_81V6.1 (Physcomitrella patens), 5'ss of exon 12
TCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaacttagattatttgctttttgttatagtgccca-tattcaaatgttcatttgattagatattagattccctctatacaatgatc--acaagctcacaacaatctgattgtgctag
 || || || ||||| || ||||| |  ||||| |||||||| ||||||||||| || ||||||||||| ||||||||| | ||||| || |||||||||||||   ||  |  |    ||| | | | |  ||   | || ||   |||  |||  |  ||  |||   |   |         ||| |  ||  | | |   |||||            
ACACATTATCCATATTGACTTTGGTTATATGCTCTCCAATTCTCCTGGTGGTGTGAATTTTGAAAGTGCTCCTTTCAAACTTACACGCGAGCTTCTTGAGgtaacttttgaaacaaa-acttctgggtgtgctgtatagtactcgcttgtgtatt--acaagtgattgattcatcataggggtctgaccttactggattatttcaatccag---------

upper sequence: GLYMA05G32460.1 (Glycine max), 5'ss of exon 12
lower sequence: EFJ26597 (Selaginella moellendorffii), 5'ss of exon 12
TCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaacttagattatttgctttttgttatagtgcccatattcaaatgttcatttgattagatattagattccctctatacaatgatcacaagctcacaacaatctgattgtgctag
      | | ||||| ||||| || |||||||| || ||||| |||||||| ||||||||||| |  || ||||| ||||| || || ||||   | |||| ||   |     |  |    ||      | | ||   || |  || ||   |||   | || |                                                     
------CGTCCATATTGATTTCGGTTTCATGCTGTCTAATTCTCCTGGTGGAGTTAACTTTGAGAACGCCCCTTTTAAATTGACTCGGGAACAATTAGAGGCAAGTgtc--gctgctgctgttgcacacttgcgcttgtacttgaacgtctttttccattgacag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480286|gb|BG509629.1|BG509629
EST:     TTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAG                         GTTATGGATTCTGATGCTGAGGGTGTTCCGAGCGAGTTCTTTGATTATTTT
genomic: TTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactta ... attgtgctagGTTATGGATTCTGATGCTGAGGGTGTTCCGAGCGAGTTCTTTGATTATTTT
EST: gi|26057149|gb|CA800063.1|CA800063
EST:     GTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAG                         GTTATGGATTCTGATGCTGAGGGTGTTCCAAGCGAGTTCTTTGATTATTTT
genomic: GTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactta ... attgtgctagGTTATGGATTCTGATGCTGAGGGTGTTCCGAGCGAGTTCTTTGATTATTTT