1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CAGTGGAAGACGTCTGATGTGGCAAAATTCACTAGGTCATTGTGTCTTGAAGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGgtttcaaaaaccattatttaaaatgttaaaatctccatttatttttgcagtttatcttagcatcttttattgcacaaatttccatttttttttatattaattctgcacgcctggctgtcctccag
species | Glycine max |
transcript | GLYMA05G27240.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: AGGCAGAGTTTNNNAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAG ACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATEST: gi|12773136|gb|BG238063.1|BG238063
genomic: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGgtttcaaaaa ... tgtcctccagACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGAT
EST: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAG ACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATEST: gi|31471408|gb|CD413436.1|CD413436
genomic: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGgtttcaaaaa ... tgtcctccagACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGAT
EST: GTGTCCCTATTTCAG ACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATEST: gi|19346215|gb|BM891095.1|BM891095
genomic: GTGTCCCTATTTCAGgtttcaaaaa ... tgtcctccagACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGAT
EST: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAG ACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATEST: gi|31561323|gb|CD487161.1|CD487161
genomic: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGgtttcaaaaa ... tgtcctccagACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGAT
EST: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAG ACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGATEST: gi|7686211|gb|AW756922.1|AW756922
genomic: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGgtttcaaaaa ... tgtcctccagACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGAT
EST: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAG ACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGAT
genomic: AGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGgtttcaaaaa ... tgtcctccagACTGTTGTTCTAATGTTATTCAATGATGCTGAGAAGCTAAGTCTTCAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGTGGAAGACGTCTGATGTGGCAAAATTCACTAGGTCATTGTGTCTTGAAGGCAGAGTTTCCCAAAGGAAGAAAGGAGTTGGCTGTGTCCCTATTTCAGgtttcaaaaaccattatttaaaatgttaaaatctccatttatttttgcagtttatcttagcatcttttattgcacaaatttccatttttttttatattaattctgcacgcctggctgtcctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG