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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttcactccaacctccctgcccccattattcatcctccatcttgcttcttattgttttctgaattccaactgtgaagacattta...

Basic information

species Glycine max
transcript GLYMA05G26240.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 12
lower sequence: LOC_Os08g10600.3 (Oryza sativa), 5'ss of exon 12
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttcactccaacctccctgc-ccccattattca---tcctccatcttgcttct-tattgttttctgaattccaactgtgaagacattta
|| ||| | || ||||| ||| |||||||||| ||||||||  ||||| | |||||||| ||||||||||| || |  |  ||     |||      | | ||  |   || |||||   |  | ||| | | | |   |||  |||| | ||  |||  ||   |   |   
GTATGCCTGCATATGTTTACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattgttactgaagaactattttgttcttgagcattatgattcatgatgtttcatttcgttccaacatttatttccgtat--caaaagttgtggttt---

upper sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G155729_T03 (Zea mays), 5'ss of exon 11
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgtt--gccttcttcactc---caacctccctgcccccatta---ttcatcctccatcttgcttcttat-tgttttctgaattccaactgtgaagacattta-------------------------------------------------------------------------
 ||||||| || ||||| ||| ||||||||||||| |||||| ||||  | |||||||| || |||||||  || | ||   | ||| | | ||   ||   |  |    |   |||   || | |||  || |    | | || |  || ||| |||    ||| || | | | ||                                                                         
ATCTGCTTGCATATGTTTACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctg-gagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacag

upper sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 12
lower sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 12
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgttgccttcttcactccaacctccctgcccccattattcatcctccatcttgcttcttattgttttctgaattccaactgtgaagacattta
|| |||||||||||||||||||||||||| || || ||||| || ||||| || |||||||||||| |||  |  || |   | ||  | |   |    |||||       |  |||    ||| ||     | | || |  |  |  ||   | |            
GTGTGCTTACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTgtgag-atgctttttactgaaattttat---cctgcaatatgcaaacatttgacatatt--caataactgatagcgaatctcttgcag------------

upper sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
GTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtg-tgttgccttcttcactcca-acctccctgcccccattattc-atcctccatcttgcttcttattgttttctgaattccaactgtgaagacattta
|| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||  ||  | ||  | | |||  ||||  | |  ||| | |  |  ||  |  |  |||       |     | || |  | ||   | ||     | ||   
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19938086|gb|BQ081553.1|BQ081553
EST:     ACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCAT                         TTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG
genomic: ACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtgtgt ... ttatatgcagTTATCATCTTGCAGAGAAGAAAATACCTTCCATACATGGATATACAATGGG