1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTGGGTACTTGTGGTATGAATACATATACAAGCTGGACAAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgttatccatttattttattccttttgctgttctttatgttttctttgtttccttcctttaagcttgaaagatagcaatcctagactaatatatggaatgcatttatatttttcttttcagctccttctattgattcttttgcctattatttttcag
species | Glycine max |
transcript | GLYMA05G25780.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTEST: gi|24136282|gb|BU926792.1|BU926792
genomic: TACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTEST: gi|207740974|gb|GD714352.1|GD714352
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTEST: gi|208104675|gb|GD905044.1|GD905044
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGTTTCGGAATTTCTCTTTEST: gi|193464012|gb|FK427880.1|FK427880
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTEST: gi|208267765|gb|GE071182.1|GE071182
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: AGGTCTTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTEST: gi|192300083|gb|FG991873.1|FG991873
genomic: AGGTC-TCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTTEST: gi|208336761|gb|GE135151.1|GE135151
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
EST: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTEST: gi|192332805|gb|FK026806.1|FK026806
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACA-TTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTT
EST: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTAC TGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
genomic: AAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgtta ... tatttttcagTGTATACATTTGCTTGAGAAATTTCAGTCAGCGGCTTCGGAATTTCTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGGTACTTGTGGTATGAATACATATACAAGCTGGACAAGGTCTCATACAACAAGCTCCACCCCTACACCTCTTGGATTCCAATTACgtgagtgttatccatttattttattccttttgctgttctttatgttttctttgtttccttcctttaagcttgaaagatagcaatcctagactaatatatggaatgcatttatatttttcttttcagctccttctattgattcttttgcctattatttttcag
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