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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGGATACGGTGGACGAGGTAGTGATTCAAATTATGGAGGGAGGGGTACTTCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAGgttagttttgtttattattagtgatattttctgttatattttggaaaatacatccccccttttttattattttaccagaggatttgggttttgttgaaggattcttaattcttaatgctgatctacatgttttttatgtaatgcttacaagtgttttattttgtggtatag

Basic information

species Glycine max
transcript GLYMA05G08750.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193348286|gb|FK309494.1|FK309494
EST:     TCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAG                         GAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATACGCT
genomic: TCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAGgttagttttg ... tgtggtatagGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGAT-CGCT
EST: gi|254317963|gb|GR832131.1|GR832131
EST:     TGCTTCTGGCAGAGGTGGAGGCCCGTGGGTTTGACTATGAGTCCCCAGAG                         GAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAAGGGATCGC
genomic: TGCTTCTGGCAGAGGTGGAGGCC-GTGGGTTTGACTATGAGTCCC-AGAGgttagttttg ... tgtggtatagGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGA-GGGATCGC
EST: gi|14259604|gb|BG882512.1|BG882512
EST:     GGCCGTGGGTTTGACTATGAGTCCCAGAG                         GAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATCGCTT
genomic: GGCCGTGGGTTTGACTATGAGTCCCAGAGgttagttttg ... tgtggtatagGAATGATAGGGATCGGAGCCCAGACAAGGGATCAAGTTGGAGGGATCGCTT
EST: gi|193344343|gb|FK312873.1|FK312873
EST:     TCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAG                         GAATGATAGGGATCGGAGCCCAGACAAAGGGATCAAGTTGGAGGGATCGCT
genomic: TCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAGgttagttttg ... tgtggtatagGAATGATAGGGATCGGAGCCCAGACAA-GGGATCAAGTTGGAGGGATCGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGGATACGGTGGACGAGGTAGTGATTCAAATTATGGAGGGAGGGGTACTTCTGCTTCTGGCAGAGGTGGAGGCCGTGGGTTTGACTATGAGTCCCAGAGgttagttttgtttattattagtgatattttctgttatattttggaaaatacatccccccttttttattattttaccagaggatttgggttttgttgaaggattcttaattcttaatgctgatctacatgttttttatgtaatgcttacaagtgttttattttgtggtatag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG