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TTCAGTTGTAAATGCTACACTGGGGGCCTGCAGTAATCTACCTGAACTAGAAGAGGGTCCTTGCCTGCCTTTTTTTGTCTGGCAGTGTGGAGAATTTGATgtaattaatctatttacagttcacgttttgcaataagctggttccttgaagaaagaaaattccacttatccaatgacaatagtgtactaatatctatttggccttattacgtataatgtttcag
species | Glycine max |
transcript | GLYMA05G04600.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TTTTTTGTCTGGCAGTGTGGAGAATTTGAT GTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAAATAEST: gi|207841950|gb|GD817194.1|GD817194
genomic: TTTTTTGTCTGGCAGTGTGGAGAATTTGATgtaattaatc ... aatgtttcagGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAAATA
EST: TTTTTTGTCTGGCAGTGTGGAGAATTTGAT GTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAAATAEST: gi|193674226|gb|FK619432.1|FK619432
genomic: TTTTTTGTCTGGCAGTGTGGAGAATTTGATgtaattaatc ... aatgtttcagGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAAATA
EST: AAGAGGGTCCTTGCCTGCC-TTTTTTGTCTGGCAGTGTGGAGAATTTGAT GTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAAATA
genomic: AAGAGGGTCCTTGCCTGCCTTTTTTTGTCTGGCAGTGTGGAGAATTTGATgtaattaatc ... aatgtttcagGTGCTTAGTGAGACATTTGATGTGATGGAGTTTGATTTTTCAAAACAAATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCAGTTGTAAATGCTACACTGGGGGCCTGCAGTAATCTACCTGAACTAGAAGAGGGTCCTTGCCTGCCTTTTTTTGTCTGGCAGTGTGGAGAATTTGATgtaattaatctatttacagttcacgttttgcaataagctggttccttgaagaaagaaaattccacttatccaatgacaatagtgtactaatatctatttggccttattacgtataatgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA