1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttctttgcccattctagcactaggaaaaatgtttctgataaaaaagttgatcaaatattcaatacattttaaccagtgaattctgctttaagct...
species | Glycine max |
transcript | GLYMA04G42670.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG GTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAEST: gi|7691223|gb|AW759354.1|AW759354
genomic: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttct ... ggtggaacagGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
EST: TCATAAGGCTGCTCANGGATAATTCTCCTTTGCCAATTGCAGCATACCAG GTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAEST: gi|207833752|gb|GD807627.1|GD807627
genomic: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttct ... ggtggaacagGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
EST: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG GTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAEST: gi|6455519|gb|AW186202.1|AW186202
genomic: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttct ... ggtggaacagGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
EST: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG GTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAEST: gi|193306739|gb|FK270089.1|FK270089
genomic: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttct ... ggtggaacagGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
EST: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG GTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAEST: gi|208188505|gb|GD983189.1|GD983189
genomic: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttct ... ggtggaacagGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
EST: AAGGCTGCTCAGGGATTAATTTCTTCCTTTTGCCAATTGCAGCATACCAG GTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATAEST: gi|23057473|gb|BU578156.1|BU578156
genomic: AAGGCTGCTCAGGGA-TAA-TTC-TCC-TTTGCCAATTGCAGCATACCAGgttcttttct ... ggtggaacagGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
EST: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG GTTTCTGGTGAATATGCAATGATAAAGGCTGGCGGTGCTCTCAAAATGATAEST: gi|17022525|gb|BM093559.1|BM093559
genomic: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttct ... ggtggaacagGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
EST: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAG GTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
genomic: TCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttct ... ggtggaacagGTTTCTGGTGAATATGCAATGATAAAGGCTGCCGGTGCTCTCAAAATGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAAGCCTGGTCTTCCTTACTTGGATATCATAAGGCTGCTCAGGGATAATTCTCCTTTGCCAATTGCAGCATACCAGgttcttttctttgcccattctagcactaggaaaaatgtttctgataaaaaagttgatcaaatattcaatacattttaaccagtgaattctgctttaagct
- - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaaa