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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATCTCTGGAGCGTTCTGTGTCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAGgtatacaaaacatactatttttttttttgacgatacgaaagatgctatgttgaataaatcagtttataataccttttatattgcacctgaattgctcattgaattatgcag

Basic information

species Glycine max
transcript GLYMA04G40740.1
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601642|gb|BQ611973.1|BQ611973
EST:     TCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAG                         GCCAAGATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCA
genomic: TCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCA
EST: gi|19453352|gb|BM954762.1|BM954762
EST:     TCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAG                         GCCAAGATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCA
genomic: TCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCA
EST: gi|19453608|gb|BM955018.1|BM955018
EST:     TCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAG                         GCCAAGATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCA
genomic: TCTAGGTCACGATCTAGATCTCAATCAGCATCACCAATCAAATCTTCTAGgtatacaaaa ... aattatgcagGCCAAGATCACGATCCCGATCACGATCACGATCTGGATCTGGATCTCCTCA