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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTCAGTTTTGCTATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAGCCGgtatgcaaagcagtatattcctttcatgcatattttctgttgacatgattacaagattaatctttcattttaatttcctag

Basic information

species Glycine max
transcript GLYMA04G34140.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G34140.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G61690.1 (Arabidopsis thaliana), 5'ss of exon 10
------------------CAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTCAGTTTTGCTATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAGCCGgtatgcaaagcag-tatattcctttc---atgcatattt-tctgttgacatgatta---caagattaatctttcattttaatttcctag
                   ||||| ||||| |||||||||||||| ||||||||||| || |||||| ||||  | || ||||| || || || ||| | ||| | || ||||| |||| |||  ||   | || |||| | |    ||   | | | | | |  | |  ||||     |   |  |  || ||       | ||||
AAAACTGACAGGAGCGGCGAAAGTTAGAGCAGGAAGTTACAGTGGTGGAATGAAACGTCGACTCAGTGTTGCGGTAGCACTTATCGGCGATCCCAAGCTGgtcttcctagatgaaccggcatgtcaacttgctacattcttctttaaatatgtgtctatatataaaaacaattaattttaagatggttgtttatacatggattctag

upper sequence: GLYMA04G34140.1 (Glycine max), 5'ss of exon 12
lower sequence: AT3G47730.1 (Arabidopsis thaliana), 5'ss of exon 12
CAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTCAGTTTTGCTATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAGCCGgtatgcaaagcagtatattcctttcatgcatattttctgttgacatgattacaagattaatctttcattttaatttcctag------
 ||| | || || |||||||||||||||||||||||||| || |||||| ||||  || | || |||||||| || ||| | ||| | ||||| || || ||||| ||     | |||||  || |||  |||||  |   | |    || |     | ||   |  || | ||      |      
GAAAATCAGGGCAGGAAGTTACAGTGGAGGAATGAAACGGCGACTCAGTGTTGCAGTTTCTCTCATTGGTGATCCAAAGCTGGTCTTCCTGGACGAACCTgtatgtaac---atttattctgttgatgtttatttatttaagtccctcttccttttctcatgcgtacttgtcatacatgggttacag

upper sequence: GLYMA04G34140.1 (Glycine max), 5'ss of exon 12
lower sequence: AT5G61730.1 (Arabidopsis thaliana), 5'ss of exon 12
CAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTCAGTTTTGCTATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAGCCGgtatgcaaagcagtatattcctttcatgcatattttc---tgttgacatgattacaagattaatctttcat-----tttaatttcctag------------------------
 ||| | ||||| |||||||||||||| ||||||||||| || || ||| |||| || || || |||||||| || ||| | ||  |||| ||||| ||||| || ||      | |||||| || |   | ||||    | ||    | |||  || | | |  ||  ||     |  |||||  |                          
GAAAATTAGAGCAGGAAGTTACAGTGGTGGAATGAAACGTCGGCTGAGTGTTGCAATAGCACTCATTGGTGATCCCAAGCTGGTTTTTCTAGATGAACCGgtctgtaatatgcaacattcctctcttttttttttttctttttttttttaattttaaaaatgagtttatataaacatcaaatttttttttattctaacatttgtggattctag

upper sequence: GLYMA04G34140.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv17s0000g05850.t01 (Vitis vinifera), 5'ss of exon 12
CAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGCCGTCTCAGTTTTGCTATTGCCCTTATTGGTGACCCTAAGTTAGTCATTCTGGATGAGCCGgtatgcaaagcagtatattcctttcatgcatattttctgttgacatgattacaagattaatctttcattttaatttcctag
|||| |||||||||| ||||| |||||||||||||||||||| || ||| ||||||| || || |||||||| || ||||| |||||| ||||||| |||||||||| |  || | | | ||    |    || ||   || |  |  ||     ||      ||  |||| ||||  |||
CAAAATGAGAGCTGGGAGTTATAGTGGAGGAATGAAACGCCGCCTTAGTGTTGCTATAGCACTAATTGGTGATCCAAAGTTGGTCATTATGGATGAACCGgtatgcagactag-agacttctcctttctgcatgtttctttaatgtatttgtttcatacgaggtttcttttgatttg-tag