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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGTGCATTGCATCCTTTGCGCCTTTCTTTTAGAACAGCAAATGGTGGAACATGCAAAATCATATTTAAAAAGGGTGACGATCTTCGGCAGGACCAGTTGgtattcctaccaatccttcttctgtcaccctgttatgcatgcaaatgaatacctgtgtacatgtgtggattgatgcaccaaaaaccacgtgcctgtccatgtgctcacacacgcactcatgatggatatttagaagacgtgagttgaattacataaatgttggctttatgtag

Basic information

species Glycine max
transcript GLYMA04G10090.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 12
lower sequence: GRMZM2G103721_T01 (Zea mays), 5'ss of exon 12
AAGTGCATTGCATCCTTTGCGCCTTTCTTTTAGAACAGCAAATGGTGGAACATGCAAAATCATATTTAAAAAGGGTGACGATCTTCGGCAGGACCAGTTGgtattcctaccaatccttcttctgtcaccctgttatgcatgcaaatgaatacctgtgtacatgtgtggattgatgcaccaaaaaccacgtgcctgtccatgtgctcacacacgcactcatgatggatatttagaagacgtgagttgaattacataaatgttggctttatgtag
 ||||| ||| | |||||||||||  | |||| |||||||||||| ||||||| ||| || || |  ||||||||||| || || ||||| || |||||||||     || |||  | |||            ||   |||| |  ||||   |   | || ||     |  |  ||  |  | || | |  || |   | || |  |  |                                                              
GAGTGCCTTGAACCCTTTGCGCCTGACATTTAAAACAGCAAATGGCGGAACATCCAAGATTATTTACAAAAAGGGTGATGACCTCCGGCAAGATCAGTTGgtaagta-actaatgttgctt------------tacatatgctatcgaatggtttgcttca-gttccagtctacacaatatcaccctcattactatggttctggttcctgaaat-----------------------------------------------------------

upper sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 12
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 12
AAGTGCATTGCATCCTTTGCGCCTTTCTTTTAGAACAGCAAATGGTGGAACATGCAAAATCATATTTAAAAAGGGTGACGATCTTCGGCAGGACCAGTTGgtattcctaccaatccttcttctgtcaccctgttatgcatgcaaatgaatacctgtgtacatgtgtggattgatgcaccaaaaaccacgtgcctgtccatgtgctcacacacgcactcatgatggatatttagaagacgtgagttgaattacataaatgttggctttatgtag
 |||||  |||||||||| |||||  ||||  ||||||||| ||||||||  ||||| ||||||||||| ||||| || ||| |||| || ||||| ||||||    | | || | ||  |||  ||   ||  |       |   || || | |  ||  | | | ||  |         ||||    ||  | |  || || ||    |                                                              
GAGTGCTCTGCATCCTTTACGCCTGACTTTCCGAACAGCAAGTGGTGGAAGTTGCAAGATCATATTTAAGAAGGGGGATGATATTCGACAAGACCAATTGgtaa--atgctaagcattaatctcaca---tgcaaactccagattggactaacggaatatttttttagagagga----tgtaaactggctgtatattgatatgttcttttag-------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193634652|gb|FK583881.1|FK583881
EST:     AGGGTGACGATCTTCGGCAGGACCAGTTG                         GTTGTTCAAATGGTATCACTAATGGATCGATTGCTTAAGTTGGAAAATCTT
genomic: AGGGTGACGATCTTCGGCAGGACCAGTTGgtattcctac ... ctttatgtagGTTGTTCAAATGGTATCACTAATGGATCGATTGCTTAAGTTGGAAAATCTT